Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0963
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    28   1.5  
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    28   1.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   4.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.6  

>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 235 LRRRCQRAGFSTFELDSISYNLFTGQLHLSLSLNS 339
           LRR C   G STF + +    L+ G+ HL+L L +
Sbjct: 117 LRRECPNCGASTF-MANHKDRLYCGRCHLTLKLEN 150


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 235 LRRRCQRAGFSTFELDSISYNLFTGQLHLSLSLNS 339
           LRR C   G STF + +    L+ G+ HL+L L +
Sbjct: 117 LRRECPNCGASTF-MANHKDRLYCGRCHLTLKLEA 150


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 564 GRISDFLNKLPYNLEKYQSQVSRVLEYVSEY 656
           G +    ++ P  L K   Q+S  LEY SEY
Sbjct: 148 GDVETIASQSPLELSKLVEQISGSLEYKSEY 178


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 483 GVSVNTDSDNSTSANAHVGHGDSSRSVCG 397
           G  V     NS+  N H  HG   R+VCG
Sbjct: 539 GTLVPPTKQNSSPKNGHGIHGSFLRTVCG 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,989
Number of Sequences: 5004
Number of extensions: 47300
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)