Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0963
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0723 + 31501900-31502808,31502846-31503295                       30   1.6  
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    29   2.7  
08_02_0453 - 17331534-17331656,17332288-17332340,17332612-173327...    28   6.3  
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    28   8.3  
05_06_0263 + 26752759-26754393                                         28   8.3  

>01_06_0723 + 31501900-31502808,31502846-31503295
          Length = 452

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 RGRLASSGRRKHPESSWLRRRCQRAGFSTFELDS 285
           R R A++ R       WL RRC+ +G  T E D+
Sbjct: 8   RARAAAAARPSPYRGGWLSRRCRSSGADTAEYDA 41


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 495 DVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQFTVENL 376
           D P+  +   D+  S   N   GHGDSS ++   F+V ++
Sbjct: 450 DSPETEAAGDDAKESEGKNNPHGHGDSSEAISVMFSVPSM 489


>08_02_0453 -
           17331534-17331656,17332288-17332340,17332612-17332704,
           17332747-17332903,17333246-17333384,17333467-17333529,
           17337990-17338071,17338167-17338245,17338853-17339032,
           17340010-17340272,17340486-17340622,17341662-17341729
          Length = 478

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 167 IVNNEYAGGWHLPGGENILKVRGSVEG 247
           ++NN+YAG  H      ++ V+GS+EG
Sbjct: 390 VINNKYAGLHHKYAYAQVIDVQGSLEG 416


>08_01_0090 -
           649631-651162,653189-655019,655313-655365,655731-655735,
           656209-656411,656837-657292,657718-657805,657917-658017,
           658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 116 IENWISRAQLRLSPFDPIVNNEYAGGWHLPGGENILKVRGSVEGVNAPASAPSNWIASP 292
           + N +S A+L   P  P+V         LP  +    V  SV  V  P +AP+NW  +P
Sbjct: 66  VGNDVSTARLIRKPPAPVVEAVAVPVAALP--DEAASVAVSVVDVERPVAAPANWRRAP 122


>05_06_0263 + 26752759-26754393
          Length = 544

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 528 EIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVS 629
           +++ NLFG E G  +S  L+KLP  +E Y S ++
Sbjct: 333 DLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLN 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,235,291
Number of Sequences: 37544
Number of extensions: 338127
Number of successful extensions: 1136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)