Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0962
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.4  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.8  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 325 SSPSLLAQLTSSPEAP--GSPPPMSR 396
           SSP L  +++ SP  P   SPPP  R
Sbjct: 83  SSPILAEKVSVSPTTPPTPSPPPEER 108


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 202 DGGEHQRWRQNHPQSWYRRSQRL 134
           D G   + +  H   W+RR  RL
Sbjct: 7   DAGRASKGQDKHMVHWFRRGLRL 29


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 510 TLLVLGPGLPASEGPPMLLREP 575
           TLLVLG         P+ +REP
Sbjct: 8   TLLVLGASAEDDTSGPVFVREP 29



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 325  SSPSLLAQLTSSPEAPGSPPPMSR 396
            S PS    + ++ E PG PP   R
Sbjct: 980  SEPSETVTIITAEEVPGGPPTSIR 1003


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 365 SGEDVSCAKSEGELTXLGMPG 303
           SG D+S   + GE   +GMPG
Sbjct: 164 SGGDLSDFITNGEWYLIGMPG 184


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 365 SGEDVSCAKSEGELTXLGMPG 303
           SG D+S   + GE   +GMPG
Sbjct: 164 SGGDLSDFITNGEWYLIGMPG 184


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 365 SGEDVSCAKSEGELTXLGMPG 303
           SG D+S   + GE   +GMPG
Sbjct: 164 SGGDLSDFITNGEWYLIGMPG 184


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 365 SGEDVSCAKSEGELTXLGMPG 303
           SG D+S   + GE   +GMPG
Sbjct: 164 SGGDLSDFITNGEWYLIGMPG 184


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 365 SGEDVSCAKSEGELTXLGMPG 303
           SG D+S   + GE   +GMPG
Sbjct: 164 SGGDLSDFITNGEWYLIGMPG 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,351
Number of Sequences: 336
Number of extensions: 2976
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)