Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0962
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 1.2
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947... 30 2.1
11_06_0156 + 20748472-20748951 29 3.7
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 3.7
04_03_0150 + 11877714-11878487,11880928-11881245 29 3.7
10_02_0061 - 4812903-4812940,4813140-4813536 29 4.9
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 28 6.5
10_08_0442 + 17957358-17958075,17958156-17958242,17958547-179586... 28 8.6
09_04_0350 + 16899076-16900164 28 8.6
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.6
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 28 8.6
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 28 8.6
04_04_1034 + 30275708-30276022,30276354-30276440,30276833-302768... 28 8.6
04_04_0039 + 22316171-22316273,22317124-22317824,22317924-223180... 28 8.6
02_02_0135 + 7096911-7098440 28 8.6
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -2
Query: 254 APQMEVLPFVSAITIPARWG*APALAAEPPTILV 153
AP LPF S + AR G APAL+A P LV
Sbjct: 10 APARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>03_02_0564 -
9477118-9477200,9477617-9477687,9477799-9477944,
9478051-9478128,9478284-9478388,9478647-9478769,
9479085-9479171,9479272-9479352,9479443-9479512,
9479604-9479662,9479763-9479831,9479912-9479962,
9480063-9480107,9480203-9480276,9480544-9480667,
9480773-9480940
Length = 477
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 572 LPKQHRRSFRSRQPRPKYQQSFASTG*VDALDVV 471
LP HR SFR+ PRP A+ G + A ++
Sbjct: 15 LPHHHRSSFRTSSPRPSRMVCAAAEGFISAAPIL 48
>11_06_0156 + 20748472-20748951
Length = 159
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 578 CWLPKQHRRSFRSRQPRPKYQQSFASTG*VDALDV 474
CWLP+ RRS R R R K+ G +D+
Sbjct: 6 CWLPRACRRSMRHRSCRTKFAWDGERDGMAATVDI 40
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 247 RWKFCHSSVRSQFQQDGGEHQRWRQNHPQSW 155
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 700 GAATVRAVNTEGGGNDHIVSKRA----GADGVGNDLE 602
G T+ V ++GGG +V R GADG+G+D +
Sbjct: 289 GRGTIGGVASDGGGQGVVVLTRGSLEGGADGIGDDFD 325
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 35 WRWRPWSW---QKSPSNSTTTSRSVSPGPRVLDAPRKP 139
WRWR W W + ++ST S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -1
Query: 324 DDXGHAWSSSNERRSRS 274
DD GHAWSS E RS S
Sbjct: 633 DDRGHAWSSLEELRSLS 649
>10_08_0442 +
17957358-17958075,17958156-17958242,17958547-17958647,
17958766-17958834,17958989-17959156
Length = 380
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 339 ERG*TDDXGHAWSSSNERRSRSGCWSVRSSADGSS 235
+RG +D GH S S ER SRS + R+ DG+S
Sbjct: 76 KRGDDNDRGHRISRS-ERESRSDTYYDRTKRDGTS 109
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -1
Query: 306 WSSSNERRSRSGCWSVRSSADGSSAIRQCDH 214
W E R RSGCW R + + R H
Sbjct: 249 WRQHGEWRQRSGCWQWRRLTEAVAGGRDSSH 279
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 325 SSPSLLAQLTSSPEAPGSPPP 387
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>05_05_0034 -
21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 229 SSVRSQFQQDGGEH--QRWRQNHPQSWYRRSQR 137
+SVR + Q + GEH QR + + SWYR ++
Sbjct: 428 ASVRRRLQFEFGEHGVQRDQSSRTNSWYRNQEK 460
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 712 VSAAGAATVRAVNTEGGGNDHIVSKRAGADGVGNDLEAHLAF 587
+S +A + N +GGG+D I G G G+D +AF
Sbjct: 369 LSLGSSAGSKRGNVDGGGDDEITG--GGGGGAGSDQRVPMAF 408
>04_04_1034 +
30275708-30276022,30276354-30276440,30276833-30276874,
30276983-30277027,30278826-30278891,30278956-30279012,
30279286-30279435,30279849-30279926,30280053-30280159,
30280261-30280291
Length = 325
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 709 SAAGAATVRAVNTEGGGNDHIVSKRAGADG 620
+AAG AT R + G++ S R G+DG
Sbjct: 12 AAAGRATARTTGSHARGSNGFASGRGGSDG 41
>04_04_0039 +
22316171-22316273,22317124-22317824,22317924-22318010,
22318361-22318420,22318971-22319912,22320678-22320723,
22320889-22321010
Length = 686
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = -1
Query: 324 DDXGHAWSSSNER----RSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNP 157
DD G + SS N+ R RS S+ + GS R+ D + + + GR+ +
Sbjct: 35 DDQGRSISSRNQSSGRDRERSSQQSISRRSSGSIGPRRHDRDGTAKSRGYASFGRSNRDR 94
Query: 156 GTVEVSGFLGASKTLGPGDTDL 91
G + S LGP D L
Sbjct: 95 GGEKDSESRNWESRLGPPDDPL 116
>02_02_0135 + 7096911-7098440
Length = 509
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 246 LRSSLLTNTRSVTAAHCWRTRHAQXRQFTLALGTANIFSGGTRVTTSNVQMHGSYN--MD 419
LRS LLT + V++ R Q +Q + +N+ T SN QM YN +D
Sbjct: 323 LRSELLTMLQLVSSPFSTRLPRHQFKQISYYHFESNLKPSFDDDTNSNAQMDQKYNQCLD 382
Query: 420 TLHNDVAIIN 449
+ + A N
Sbjct: 383 EIQSTTARFN 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,937,538
Number of Sequences: 37544
Number of extensions: 407020
Number of successful extensions: 2023
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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