Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0962
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)                     38   0.006
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)           36   0.044
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     30   1.6  
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              30   2.2  
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     30   2.2  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   2.9  
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)                  29   2.9  
SB_22567| Best HMM Match : Trypsin (HMM E-Value=6.6e-30)               29   2.9  
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)                    29   5.0  
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.6  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_12588| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 865

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +3

Query: 198 PSCWNCDRTDEWQNFHL-RSSLLTNTRSVTAAHCWRTRHAQXRQFTLALGTANIFSGGTR 374
           P  W    +  ++  H+  +SLLT   ++TAAHC  T       +TL  G     + G  
Sbjct: 249 PHSWPWQLSFRYKGSHICGASLLTPGWALTAAHCL-TLSDDASDYTLVAGAHQRENDGQV 307

Query: 375 VTTSNVQMHGSYNMDTLHNDVAIIN-HNHVGFTNNIQRINLAS 500
              S ++ H  ++M  + NDVA++    +V  ++ +  I L S
Sbjct: 308 FGISKIRKHKGFSMVHVRNDVALLKLSTYVQLSDKVGTICLPS 350



 Score = 31.5 bits (68), Expect = 0.71
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +2

Query: 551 TSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSG 718
           +SD  + A+  Q+ +V L  +    C  T G  V   S +C  G+ G S C+GDSG
Sbjct: 422 SSDQHTLADKLQQSKVPL--VNYTTCRSTNGATVDENSMICAGGA-GSSACNGDSG 474


>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 237 NFHLRSSLLTNTRSVTAAHCWRTRHAQXRQFTLALGTANIFSGGTRVTTSNVQ---MHGS 407
           NF    SL+++T  VTAAHC   R +   Q+ + +G  N         T NV+    H  
Sbjct: 499 NFICGGSLVSSTWVVTAAHC-VARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQ 557

Query: 408 YNMDTLHNDVAII 446
           YN   L ND+A+I
Sbjct: 558 YNNPRLSNDIALI 570


>SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)
          Length = 348

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 590 RQVSLQVITNAVCARTFGNNVIIASTLCV-DGSNGRSTCSGDSG 718
           R  + ++  N VC R+  +N     T C  DG  G  TC GDSG
Sbjct: 249 RHSAFEIQPNDVCDRSTRHNFNATVTFCAGDGKGGNDTCHGDSG 292


>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 590 RQVSLQVITNAVCARTFGNNVIIASTLCV--DGSNGRSTCSGDSG 718
           +Q  + +++   C R +G  +   S +CV  +  N  S+C GDSG
Sbjct: 465 QQAKVPIVSKEDCKRAYGAIIRPYSHICVGFNTENAASSCQGDSG 509


>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 548 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIAS-TLCVDGSNGRSTCSGDSG 718
           RT    S A   Q  Q  L V  ++ C RT G  V + S ++   G  G+  C GDSG
Sbjct: 162 RTVGGGSAAGILQ--QAMLPVAGDSDCQRTNGRLVPVDSRSMICAGGQGKGGCQGDSG 217


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +3

Query: 255 SLLTNTRSVTAAHCWRTRHAQXRQFTLALGTANIFSGGTR----VTTSNVQMHGSYNMDT 422
           SL+ +   +TAAHC  ++  +  +  + LG  +     T     +  S +  H +YN  T
Sbjct: 420 SLIHSNWVLTAAHCISSK--RPAEVVVRLGAHSRLGSLTTDMQDIKVSAIITHSNYNSRT 477

Query: 423 LHNDVAII 446
           ++ND+A++
Sbjct: 478 MYNDIALL 485


>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 590 RQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSG 718
           +Q    V+ +  CA          +T+   G +G S CSGDSG
Sbjct: 457 QQARTPVVDHETCAIKLDKFAADKTTMICAGGSGSSACSGDSG 499



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 255 SLLTNTRSVTAAHCWRTRHAQXRQFTLALGTANIFSGGTRVTTSNVQMHGSY--NMDTLH 428
           SLL++T  +TAAHC    H     +T+ +G       GT    S    H  Y    D  H
Sbjct: 343 SLLSSTWVLTAAHCVIRSH-NTSDYTVIVGAHKRVLDGTEHKLSAFYKHEKYVGGKDKKH 401

Query: 429 NDVAII 446
            D+A+I
Sbjct: 402 -DLALI 406


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 86  TSRSVSPGPRVLDAPRKPL 142
           TS    P PRVLD+PRKPL
Sbjct: 379 TSLLAYPTPRVLDSPRKPL 397


>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
          Length = 687

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 590 RQVSLQVITNAVCARTFGNNVII--ASTLCVDGSNGRSTCSGDSG 718
           ++  L V +NA C +  G  + +  AS +C  G  GR  C GDSG
Sbjct: 548 QEAELVVASNAKCDKKNGELLPVDDASMVCAGGP-GRGGCQGDSG 591


>SB_22567| Best HMM Match : Trypsin (HMM E-Value=6.6e-30)
          Length = 249

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 590 RQVSLQVITNAVCARTFGNNVII--ASTLCVDGSNGRSTCSGDSG 718
           ++  L V +NA C +  G  + +  AS +C  G  GR  C GDSG
Sbjct: 88  QEAELVVASNAKCDKKNGELLPVDDASMVCAGGP-GRGGCQGDSG 131


>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -1

Query: 303 SSSNERRSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNPGTVEVSGFLGA 124
           SSS+   S SG  S  SS++  S     DH ++      S   +T +  GT++  GF G 
Sbjct: 709 SSSSGSSSSSGSSSSGSSSESESETVGNDHKTASKTKVQSTVIQTCNLDGTIDSKGFAG- 767

Query: 123 SKTLGP 106
              LGP
Sbjct: 768 --DLGP 771


>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 69  GLFCHDHGRQRHQYCCEDLHDYY 1
           G FCH H   R   CC+DL   Y
Sbjct: 601 GSFCHIHPTDRFAVCCKDLLSSY 623


>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 255 SSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNPGTVEVSGF 133
           S +   +A R CD ++S      S    TTH  G  +++GF
Sbjct: 261 SGSPTEAANRDCDDSASSTSDKESAPDETTHASGNTKLTGF 301


>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 237 NFHLRSSLLTNTRSVTAAHCWR-TRHAQXRQFTLALGTANIFSGGTRV-TTSNVQMHGSY 410
           +F    SL++ T  VTAAHC   + H    +        N   G  +      +  H +Y
Sbjct: 90  SFICGGSLVSPTWVVTAAHCIAGSSHTPSYKVVTGEHIRNSPEGTEQTHDVKRIITHPTY 149

Query: 411 NMDTLHNDVAII 446
           N   L ND+A+I
Sbjct: 150 NSPQLSNDIALI 161


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +3

Query: 246  LRSSLLTNTRSVTAA--HCWRTRHAQXRQFTLALGTANIFSGGTRVTTSNVQMHGSYNMD 419
            ++S+    + S T A  H      +Q + +   L  +N  S G ++    +    S N++
Sbjct: 807  VKSNYACRSSSCTCACYHISSPLSSQTKPWLFTLKPSNASSSGAKIKDEMMSQMASVNVN 866

Query: 420  TLHNDVAIINHNHVGFTNNIQRINLASGSKTLLVL 524
             +   + + +    G T+N   ++ AS  K+LLVL
Sbjct: 867  DISKLIQVASVV-AGVTSNRTELSEASQEKSLLVL 900


>SB_12588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 590 RQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSG 718
           RQ  + ++ +  C R      +   T+   G  G S C+GDSG
Sbjct: 83  RQSLVPLVDHVTCKRGLKEFYLDEETMMCVGGAGSSACNGDSG 125


>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = -1

Query: 708 PLQVLRPLEPSTQRVEAMITLFPNVRAQTALVMTWRLTWRFCWLLAPEAASEVL 547
           P Q    LEP    VE ++T    V A TA V    L  R    L PE+A+E L
Sbjct: 118 PFQSAESLEPLLLMVEQLVTSPRAVDASTASVYLKILVDRCMVPLYPESATEYL 171


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 393 QMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSKTLLVL 524
           Q H   N+  ++N+  IIN+N++   NNI   N+   +  ++++
Sbjct: 384 QQHHHQNI-IINNNNIIINNNNIIINNNINNNNIIINNNNIIII 426


>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 544 RKDLRC---CFGSQQPTKTPSEPPGHYQRRLRPHVWKQCDHC 660
           R++ +C   C+G  +   +P  PP     RL    W+ CD C
Sbjct: 279 RRNHKCNNLCYGCGEQECSPLVPPAEQDHRLE---WQYCDEC 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,091,768
Number of Sequences: 59808
Number of extensions: 416909
Number of successful extensions: 1852
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)