Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0962
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical p... 32 0.47
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 4.4
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 29 4.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 5.8
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 5.8
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 5.8
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 5.8
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 5.8
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 5.8
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 28 7.7
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 28 7.7
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical
protein Y49E10.17 protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -1
Query: 300 SSNERRSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTT--HNPGTVE 145
SSN S SG S SS++ SS+ R+ + SS+ S+SVG ++ N G+++
Sbjct: 125 SSNGSSSSSGSTSDNSSSNISSSSRRSSNGSSRSSSSSSVGSMSSIASNVGSID 178
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = -1
Query: 303 SSSNERRSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNPGTVEVSGFLGA 124
S+S E S+ + RSS S AI S++ VST+ G T P TV S G+
Sbjct: 1176 STSGEITSQGSTQTPRSSLSTSPAIS----TSTQQSVSTNSPGSTVTQPSTVRGSTSSGS 1231
Query: 123 SKTLG 109
+ T G
Sbjct: 1232 TVTTG 1236
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -1
Query: 309 AWSSSNERRSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNPGTVEVSGFL 130
A ++S E S+ + SS S+AI S++ VST+ G T P TV S
Sbjct: 769 ASTTSGEMTSQGSTQTPGSSVSTSAAIL----TSTQQSVSTNSPGSTVTRPSTVSGSTSS 824
Query: 129 GASKTLG 109
G++ T+G
Sbjct: 825 GSTVTVG 831
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 380 GDPGASGEDVSCAKSEGELTXLGMPGPP 297
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -1
Query: 309 AWSSSNERRSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNPGTVEVSGFL 130
A ++S E S+ + SS S+AI S++ VST+ G T P TV S
Sbjct: 562 ASTTSGEMTSQGSTQTPGSSVSTSAAIL----TSTQQSVSTNSPGSTVTRPSTVSGSTSS 617
Query: 129 GASKTLG 109
G++ T+G
Sbjct: 618 GSTVTVG 624
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -1
Query: 309 AWSSSNERRSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNPGTVEVSGFL 130
A ++S E S+ + SS S+AI S++ VST+ G T P TV S
Sbjct: 769 ASTTSGEMTSQGSTQTPGSSVSTSAAIL----TSTQQSVSTNSPGSTVTRPSTVSGSTSS 824
Query: 129 GASKTLG 109
G++ T+G
Sbjct: 825 GSTVTVG 831
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 229 SSVRSQFQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 98
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 229 SSVRSQFQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 98
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 28.7 bits (61), Expect = 4.4
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 10/128 (7%)
Frame = +3
Query: 225 DEWQNFHLRSSLLTNTRSVTAAHCWRTRHAQXRQFTLALGTANIFSGGTRVTTSNVQMHG 404
D Q ++++ + VTAAHC Q R F N + + +H
Sbjct: 59 DNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHS 114
Query: 405 SYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSKTLL-------VLGPGLPASE---GP 554
YN T ND+A++ + I+ + L LL V+G GL E G
Sbjct: 115 GYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGE 174
Query: 555 PMLLREPT 578
P L+ T
Sbjct: 175 PKLINSQT 182
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 380 GDPGASGEDVSCAKSEGELTXLGMPGPPAM 291
G PGA G D C ++G G PGPP M
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGM 142
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 380 GDPGASGEDVSCAKSEGELTXLGMPGPPAM 291
G PGA G D C ++G G PGPP M
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGM 142
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 380 GDPGASGEDVSCAKSEGELTXLGMPGPPAM 291
G PGA G D C ++G G PGPP M
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGM 142
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 380 GDPGASGEDVSCAKSEGELTXLGMPGPPAM 291
G PGA G D C ++G G PGPP M
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGM 142
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 380 GDPGASGEDVSCAKSEGELTXLGMPGPPAM 291
G PGA G D C ++G G PGPP M
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGM 142
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 307 LVLQQ*AAVTERVLVSKELRRWKFCHSSVRSQFQQDG 197
++L A +T + L + L++++ CHS+V +FQ+ G
Sbjct: 174 MILNLFALLTNQFLRTWNLKKYEECHSNVSIRFQRGG 210
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 380 GDPGASGEDVSCAKSE-GELTXLGMPGPP 297
G PG G +V C G + +G+PGPP
Sbjct: 199 GIPGVPGANVICPPGPAGSMGSVGLPGPP 227
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -1
Query: 267 WSVRSSADGSSA---IRQCDHNSSKMGVSTSVGGRTTHN--PGTVEVSGFLGASKTLGPG 103
+SVR + DG++A + ++ T GG+ PG EVS GAS+ + G
Sbjct: 115 FSVRGTVDGAAAGLPLVLTENGKQIAETKTEDGGKYEMRAPPGKYEVSTGAGASECISKG 174
Query: 102 DTDLDV 85
T ++V
Sbjct: 175 KTSVEV 180
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -1
Query: 267 WSVRSSADGSSA---IRQCDHNSSKMGVSTSVGGRTTHN--PGTVEVSGFLGASKTLGPG 103
+SVR + DG++A + ++ T GG+ PG EVS GAS+ + G
Sbjct: 113 FSVRGTVDGAAAGLPLVLTENGKQIAETKTEDGGKYEMRAPPGKYEVSTGAGASECISKG 172
Query: 102 DTDLDV 85
T ++V
Sbjct: 173 KTSVEV 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,077,163
Number of Sequences: 27780
Number of extensions: 293211
Number of successful extensions: 1283
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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