Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0962
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain... 32 0.44
At4g30180.1 68417.m04291 expressed protein 29 2.3
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 3.1
At5g53440.1 68418.m06641 expressed protein 29 3.1
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 29 4.1
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 29 4.1
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 27 9.5
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase... 27 9.5
>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein predicted proteins,
Arabidopsis thaliana and Drosophila melanogaster
contains Pfam profile PF00564: PB1 domain
Length = 531
Score = 31.9 bits (69), Expect = 0.44
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Frame = +3
Query: 231 WQNFHLRSSLLTNTRSVTAAHCWRTRHAQXRQFTL---ALGTANIFSGGTRVTTSNVQMH 401
WQ S++ N + T+ + + Q + + + + ++ R T Q +
Sbjct: 346 WQGNTNNSNIQGNIYTTTSQNLPEQQQQQQQVYMIPAQSQAPGTLYQSVMRPTVQGNQGY 405
Query: 402 GSYNMDTLHN-DVAIINHNHVGFTNNIQRINLASGSKTLLVLGPGLPASEGPPMLLREP 575
+ LH+ D + N G+ + + G + + +GP + S GPPM L+EP
Sbjct: 406 YPSPVQRLHHPDAYMEQQNQPGYNVVQPQPTFSGGPQVMTSVGPQVMTSVGPPMGLQEP 464
>At4g30180.1 68417.m04291 expressed protein
Length = 158
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 17 SSQQY*WRWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRK 136
S+Q++ W S SN TTT+ S S G R+L+ P K
Sbjct: 62 SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 537 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 668
P PP PT N A +S P P AP RL T + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = -1
Query: 315 GHAWSS-SNERRSRSGCWSVRSSADGSSAIRQCDHNSSKMGVSTSVGGRTTHNPGTVEVS 139
G W S ++E +SR+G S+ S S +++ D NS+++ S+GG+T+H+ S
Sbjct: 758 GRGWESGADEWKSRNGDASMEVS---SMSVK--DDNSAQVADDESLGGQTSHSDNNRAKS 812
Query: 138 GFLGASKT 115
G++ T
Sbjct: 813 VEAGSNLT 820
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 68 PSNSTTTSRSVSPGPRVLDAPRKPL 142
PS+STTT+R+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 68 PSNSTTTSRSVSPGPRVLDAPRKPL 142
PS+STTT+R+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 301
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 529 LGCRLRKDLRCCFGSQQPTKTPSEPP 606
L C KDLR CF P P PP
Sbjct: 10 LSCLQFKDLRFCFRQYPPPPPPPPPP 35
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 216 HNSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 115
H + MG STS+ G T+H+P V G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327
>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK9) mitogen-activated protein
kinase kinase (MAPKK) family, PMID:12119167
Length = 310
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 581 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTC 703
+++RQ++L++ + R F + A+T V G NG S C
Sbjct: 5 RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,552,471
Number of Sequences: 28952
Number of extensions: 276890
Number of successful extensions: 1151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -