Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0959
(643 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 152 8e-36
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 151 1e-35
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 150 2e-35
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 128 1e-28
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 127 2e-28
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 120 3e-26
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 117 2e-25
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 103 5e-21
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 101 1e-20
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 96 7e-19
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 93 7e-18
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 91 3e-17
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 81 2e-14
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 71 2e-11
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 61 3e-08
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 60 6e-08
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 58 2e-07
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 56 1e-06
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 56 1e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 52 2e-05
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 52 2e-05
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 52 2e-05
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 50 4e-05
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 49 1e-04
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 48 2e-04
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 44 0.002
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 44 0.002
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 43 0.007
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 42 0.013
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 42 0.017
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 40 0.051
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 39 0.12
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 38 0.21
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 37 0.48
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q15P33 Cluster: Putative uncharacterized protein precur... 34 3.4
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 3.4
UniRef50_A2BLL3 Cluster: Putative uncharacterized protein; n=1; ... 33 4.4
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 152 bits (368), Expect = 8e-36
Identities = 69/81 (85%), Positives = 77/81 (95%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGYV+R++GGNDKQGFPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDAN
Sbjct: 46 KGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDAN 105
Query: 181 LSVLALVIVRKGAQEIPGLTD 243
LSVL LVIV+KG ++IPGLTD
Sbjct: 106 LSVLNLVIVKKGEKDIPGLTD 126
Score = 91.9 bits (218), Expect = 1e-17
Identities = 53/95 (55%), Positives = 60/95 (63%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQ 434
RRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L KEGK KPR KAPKIQRLVTP VLQ
Sbjct: 131 RRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKIQRLVTPRVLQ 186
Query: 435 XXXXXXXXXXXXXXXXXSSEAEYANCLHRERRNPR 539
AEYA L + + +
Sbjct: 187 HKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAK 221
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 151 bits (366), Expect = 1e-35
Identities = 67/81 (82%), Positives = 75/81 (92%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+
Sbjct: 46 KGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQ 105
Query: 181 LSVLALVIVRKGAQEIPGLTD 243
LSVL+LVIV+KG Q+IPGLTD
Sbjct: 106 LSVLSLVIVKKGEQDIPGLTD 126
Score = 95.5 bits (227), Expect = 1e-18
Identities = 53/110 (48%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQ 434
RRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKIQRLVTPVVLQ
Sbjct: 131 RRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQ 187
Query: 435 XXXXXXXXXXXXXXXXXSSEAEYANCL------HRERRNPRCVARKRSNA 566
A+YA L +E+R+ + + ++R+++
Sbjct: 188 RKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQLMKKRRASS 237
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 150 bits (364), Expect = 2e-35
Identities = 66/81 (81%), Positives = 75/81 (92%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGYV ++AGGNDKQGFPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD N
Sbjct: 46 KGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQN 105
Query: 181 LSVLALVIVRKGAQEIPGLTD 243
LS LAL++V+KG ++IPGLTD
Sbjct: 106 LSALALIVVKKGEKDIPGLTD 126
Score = 109 bits (263), Expect = 4e-23
Identities = 59/101 (58%), Positives = 65/101 (64%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQ 434
RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K+GK KPR KAPKIQRL+TPVVLQ
Sbjct: 131 RRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKIQRLITPVVLQ 187
Query: 435 XXXXXXXXXXXXXXXXXSSEAEYANCLHRERRNPRCVARKR 557
+EAEY LH RR R R R
Sbjct: 188 RKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSR 228
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 128 bits (308), Expect = 1e-28
Identities = 57/80 (71%), Positives = 65/80 (81%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
GYV R+ GGNDKQGFPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +L
Sbjct: 88 GYVFRITGGNDKQGFPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDL 147
Query: 184 SVLALVIVRKGAQEIPGLTD 243
S L L +V+KG EIPGLTD
Sbjct: 148 SALNLTLVKKGTNEIPGLTD 167
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVT 419
++LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K R PKIQRLVT
Sbjct: 172 KKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKIQRLVT 221
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 127 bits (307), Expect = 2e-28
Identities = 57/81 (70%), Positives = 67/81 (82%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGYVL++ GGNDKQGFPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV +
Sbjct: 46 KGYVLKITGGNDKQGFPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQD 105
Query: 181 LSVLALVIVRKGAQEIPGLTD 243
+ VLAL +V+KGA EI GLTD
Sbjct: 106 IRVLALQVVKKGANEIAGLTD 126
Score = 53.6 bits (123), Expect = 4e-06
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVT 419
RRLGPKR +K+R+LF K D V++ +++R K+GK+ R KAPKIQRLVT
Sbjct: 131 RRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKAPKIQRLVT 184
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 120 bits (289), Expect = 3e-26
Identities = 55/80 (68%), Positives = 64/80 (80%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGYV ++AGGNDK GFPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV +
Sbjct: 46 KGYVFKIAGGNDKDGFPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPD 105
Query: 181 LSVLALVIVRKGAQEIPGLT 240
+ VLAL IV+KG EI GLT
Sbjct: 106 MRVLALQIVKKGVAEIDGLT 125
Score = 59.7 bits (138), Expect = 6e-08
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTP 422
R+LGPKRA+ I+KLF L KEDD +++ V++R +GK+ R K PKIQRL+TP
Sbjct: 131 RKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKCPKIQRLITP 185
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 117 bits (282), Expect = 2e-25
Identities = 51/80 (63%), Positives = 64/80 (80%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGY+ R+ GG DKQGFPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+
Sbjct: 46 KGYLFRIGGGFDKQGFPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDE 105
Query: 181 LSVLALVIVRKGAQEIPGLT 240
+S L V+++KG +EI GLT
Sbjct: 106 ISALHCVVLQKGEKEIDGLT 125
Score = 36.7 bits (81), Expect = 0.48
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLS-KEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVT 419
RR GPKRAS +R +F ++ + D + V+KR K GK +PK+QRL+T
Sbjct: 131 RRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK------FTSPKVQRLIT 178
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 103 bits (246), Expect = 5e-21
Identities = 45/81 (55%), Positives = 62/81 (76%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGY+L++ GG DK GFPM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV +
Sbjct: 45 KGYILKITGGCDKDGFPMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGD 104
Query: 181 LSVLALVIVRKGAQEIPGLTD 243
+SVL ++V+KG EI G+T+
Sbjct: 105 ISVLNTIVVKKGEGEIEGVTN 125
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/29 (62%), Positives = 26/29 (89%)
Frame = +3
Query: 258 RLGPKRASKIRKLFNLSKEDDVRRYVVKR 344
R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 131 RAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 101 bits (243), Expect = 1e-20
Identities = 46/80 (57%), Positives = 58/80 (72%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
G R+ GGND QGFPM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L
Sbjct: 53 GCTFRITGGNDAQGFPMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDL 112
Query: 184 SVLALVIVRKGAQEIPGLTD 243
L++V+V G + +PGLTD
Sbjct: 113 HALSVVLVDAGDKTLPGLTD 132
Score = 37.1 bits (82), Expect = 0.36
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNL--SKEDDVRRYVVKRV---LPAKEGKENAKPRHKAPKIQRLVT 419
+RL PKRASKIR+LF L +K D + +V + L + +N + + K PK+QR+VT
Sbjct: 137 KRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLKYPKVQRVVT 196
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 95.9 bits (228), Expect = 7e-19
Identities = 48/76 (63%), Positives = 55/76 (72%)
Frame = +1
Query: 16 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 195
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 196 LVIVRKGAQEIPGLTD 243
L +V+KGA EI GLTD
Sbjct: 116 LQVVKKGANEIAGLTD 131
Score = 46.4 bits (105), Expect = 6e-04
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE-GKEN-AKPRHKAPKIQRLVT 419
RRLGPKR +K+R+LF K D RV+ ++E G + K R KAPKIQRLVT
Sbjct: 136 RRLGPKRLTKLRRLFGFKKAD--------RVISSEEHGPQRYGKKRQKAPKIQRLVT 184
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 92.7 bits (220), Expect = 7e-18
Identities = 45/71 (63%), Positives = 56/71 (78%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGY LR+AGGNDKQGFPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN
Sbjct: 46 KGYQLRIAGGNDKQGFPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEAN 104
Query: 181 LSVLALVIVRK 213
+S L LV+++K
Sbjct: 105 VSALTLVVLKK 115
Score = 32.7 bits (71), Expect = 7.7
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 258 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 401
RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 121 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 90.6 bits (215), Expect = 3e-17
Identities = 44/81 (54%), Positives = 57/81 (70%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
+G ++ + GG+D QGFPM G LT RVR L+SKG + YR RR G R+RKSVRG IV
Sbjct: 31 EGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEE 90
Query: 181 LSVLALVIVRKGAQEIPGLTD 243
+ VL L+I+R G +EI GLT+
Sbjct: 91 ICVLNLIILRPGEKEIDGLTN 111
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 81.0 bits (191), Expect = 2e-14
Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVD 174
KGY+ R+ GG+DK GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++
Sbjct: 47 KGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLA 106
Query: 175 ANLSVLALVIVRKGAQEIPGLTD 243
++++++ + I + G Q I G+TD
Sbjct: 107 SDIALVNVTISKVGDQPIEGVTD 129
Score = 76.2 bits (179), Expect = 6e-13
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 428
RRLGPKRASKIRKLFNLS+ +DVR+YVV+R + K GK K R KAPKIQRL+TP V
Sbjct: 134 RRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKAPKIQRLITPRV 187
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 71.3 bits (167), Expect = 2e-11
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Frame = +1
Query: 19 VAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVL 192
+ GG DKQGFPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL
Sbjct: 52 ITGGQDKQGFPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVL 111
Query: 193 ALVIV 207
+ ++
Sbjct: 112 NIKLL 116
Score = 37.9 bits (84), Expect = 0.21
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQ 434
+ L KR+S +RK+ L+K DD+R++ +K AK+ K KIQRL+TP+ +Q
Sbjct: 132 KTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV-------KIQRLITPIKIQ 181
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/76 (38%), Positives = 49/76 (64%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G R+RK+VRG + +
Sbjct: 43 KGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKGLRRRKTVRGNTIADD 101
Query: 181 LSVLALVIVRKGAQEI 228
+S + + + +G Q +
Sbjct: 102 ISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 59.7 bits (138), Expect = 6e-08
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +1
Query: 7 YVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 186
Y L++ GG D+ GFPM+ + +R RLL+S G +RP+ G RKRK VRG ++ ++
Sbjct: 48 YELKITGGTDRDGFPMRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDIL 106
Query: 187 VLALVIVRKG 216
+ V+V+ G
Sbjct: 107 QINTVVVKHG 116
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 57.6 bits (133), Expect = 2e-07
Identities = 27/65 (41%), Positives = 42/65 (64%)
Frame = +1
Query: 13 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVL 192
L++ GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ +
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQV 119
Query: 193 ALVIV 207
+ IV
Sbjct: 120 NMKIV 124
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 55.6 bits (128), Expect = 1e-06
Identities = 22/32 (68%), Positives = 29/32 (90%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 96
KGY++R++GGNDKQGFPMKQ VLT+ R+ LL+
Sbjct: 46 KGYMVRISGGNDKQGFPMKQDVLTHDRIHLLL 77
Score = 48.0 bits (109), Expect = 2e-04
Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDD-----VRRYVVKRVLP-AKEGKENAKPRHKAPKIQRL 413
R +GPKRAS+IRKLFNLSKEDD + R + KR+ KE KE K + + K QRL
Sbjct: 92 RHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKE--KRQEQIAKRQRL 148
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 55.6 bits (128), Expect = 1e-06
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 13 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 162
L + GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDI 204
Query: 184 SVLALVIV 207
+ VIV
Sbjct: 205 VQINTVIV 212
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/66 (34%), Positives = 42/66 (63%)
Frame = +1
Query: 13 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVL 192
L++ GG+D GFPM+ V+ ++ ++L+S G + P +GER+RK++RG + + +
Sbjct: 150 LKITGGSDNSGFPMRFDVIGAAKRKILLS-GPPGFYPNENGERRRKTIRGNTISQEIVQI 208
Query: 193 ALVIVR 210
+IVR
Sbjct: 209 NTIIVR 214
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/78 (29%), Positives = 47/78 (60%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
+GY L++ GG+D+ GF M+ + ++R+L+ +G Y + G R+RKS+RG + +
Sbjct: 42 EGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEKGLRRRKSLRGNTISKD 100
Query: 181 LSVLALVIVRKGAQEIPG 234
++++ +V G+ + G
Sbjct: 101 ITLINTKVVEYGSAPLGG 118
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/71 (36%), Positives = 42/71 (59%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KG L + GG+D+ GFPM+ + + R L+S G + PR GER+RK+VRG + +
Sbjct: 167 KGLQLEIRGGSDESGFPMRPDIPGPVKKRALLS-GPPGFWPREKGERRRKTVRGNTISED 225
Query: 181 LSVLALVIVRK 213
+ + IV++
Sbjct: 226 IVQINTKIVKQ 236
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
GY + + GG+D G PM++ V + + +L+ +G + + P DGERKR +VRG V +
Sbjct: 47 GYTVEITGGSDDAGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAV 105
Query: 184 SVLALVIVRKGAQEIPGL 237
+ L + I G + + L
Sbjct: 106 AQLNVAIDEHGEEPVAEL 123
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 171
G ++ GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 44.4 bits (100), Expect = 0.002
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +1
Query: 79 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 213
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 62
Score = 32.7 bits (71), Expect = 7.7
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 258 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 401
RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 44.4 bits (100), Expect = 0.002
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDI 105
Query: 184 SVLALVIVRKGAQEIPGL 237
+ +V G++ I L
Sbjct: 106 VQVNAKVVEYGSKSIKAL 123
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 42.7 bits (96), Expect = 0.007
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
GY +++ GG+ GF M+ + T + ++L+ K S YR ++G RKR + RG I+ +++
Sbjct: 47 GYKMKITGGSSVDGFAMRPDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDI 104
Query: 184 SVLALVIVRKGAQEI 228
+ + L I + G I
Sbjct: 105 TQINLKITQYGPTPI 119
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +1
Query: 4 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVR 159
GY + + GG+D+ G P ++ + R +LL+++G + P +GERKRK +R
Sbjct: 47 GYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVMEGERKRKMIR 97
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 41.5 bits (93), Expect = 0.017
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Frame = +1
Query: 19 VAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVL 192
+ GG+DKQGF +K+ + T R+++ + KG R +R K+++VRG I+ + +S +
Sbjct: 51 INGGHDKQGFLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSI 110
Query: 193 ALVIVRKGAQE 225
LV + +E
Sbjct: 111 NLVKLPNNVKE 121
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 39.9 bits (89), Expect = 0.051
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDA 177
KG +R+ GG+ +G PM GV + + +++ G Y P + G +K+K VRG I D+
Sbjct: 51 KGAKIRITGGSGIEGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDS 109
Query: 178 NLSVLALVIVRKGAQEIPGLTDG 246
+ + A+++ K P + G
Sbjct: 110 IVQINAVIVYPKDYTGPPAIPLG 132
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 38.7 bits (86), Expect = 0.12
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 13 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 162
+R+ GG+DK G PM+ V +R +L+S+G R G R RK VRG
Sbjct: 54 IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGGRTRKLVRG 102
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 37.9 bits (84), Expect = 0.21
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 13 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
L++ GG+DK G PM+ + +R +L+SKG + G+R RK +RG V +
Sbjct: 48 LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQRVRKLMRGNTVSEEI 103
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 36.7 bits (81), Expect = 0.48
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = -2
Query: 252 YISISQSRNFLGTLAHNNKSQDREIGVNNTST----N*FTFSLSIAARSVT*VAL*HQKT 85
+ I ++R+ L N++ Q + ++ +T + FT + ++AA + AL H++
Sbjct: 123 HFGIGEARDVGVALLDNDQVQHGNVLGDDATTARLASAFTLASAVAAEAAR--ALGHEQE 180
Query: 84 NTAVCQDALFHRESLLVVAASDTKYIAL 1
+T V Q AL H E+LLVV D + ++L
Sbjct: 181 HTLVRQHALLHAEALLVVTTHDLEDVSL 208
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 35.1 bits (77), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 3 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKG 104
G C RWR ++ + DE G + PC+ DV+G
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRG 50
>UniRef50_Q15P33 Cluster: Putative uncharacterized protein
precursor; n=1; Pseudoalteromonas atlantica T6c|Rep:
Putative uncharacterized protein precursor -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 587
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = -3
Query: 554 LPGDAPWIPSFSVQAISIFSLRGLALSETLLLQSETMTSTL 432
L GD W+ V+A ++LRGLALS+ LL E ++STL
Sbjct: 382 LNGDF-WLNDAGVKANQDWNLRGLALSDVSLLNQEKLSSTL 421
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 49 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 225
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 226 I 228
+
Sbjct: 465 L 465
>UniRef50_A2BLL3 Cluster: Putative uncharacterized protein; n=1;
Hyperthermus butylicus DSM 5456|Rep: Putative
uncharacterized protein - Hyperthermus butylicus (strain
DSM 5456 / JCM 9403)
Length = 273
Score = 33.5 bits (73), Expect = 4.4
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -3
Query: 587 HALKLTACV*SLPGDAPWIPSFSVQAISIFSLRGLALSETLLLQSETMTSTLQNYRGD 414
HA + A LPGDAPW+ V ++ + L G+A + T++ + S +Q Y D
Sbjct: 99 HAAEAGARAVILPGDAPWLTWLQVWSLQAYGL-GVADAATIIHGDGYLESLVQAYNPD 155
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,698,204
Number of Sequences: 1657284
Number of extensions: 11454129
Number of successful extensions: 32222
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 31289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32196
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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