Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0959
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   130   2e-31
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   129   3e-31
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.75 

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  130 bits (313), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 67/80 (83%)
 Frame = +1

Query: 4   GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
           GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L
Sbjct: 47  GYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDL 106

Query: 184 SVLALVIVRKGAQEIPGLTD 243
           +VLAL IV++G Q+IPGLTD
Sbjct: 107 AVLALAIVKQGEQDIPGLTD 126



 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
 Frame = +3

Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVL 431
           +RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  L
Sbjct: 131 KRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTL 187

Query: 432 Q 434
           Q
Sbjct: 188 Q 188


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  129 bits (312), Expect = 3e-31
 Identities = 58/80 (72%), Positives = 67/80 (83%)
 Frame = +1

Query: 4   GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 183
           GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L
Sbjct: 47  GYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDL 106

Query: 184 SVLALVIVRKGAQEIPGLTD 243
           +VLAL I+++G Q+IPGLTD
Sbjct: 107 AVLALAIIKQGEQDIPGLTD 126



 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
 Frame = +3

Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVL 431
           +RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  L
Sbjct: 131 KRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTL 187

Query: 432 Q 434
           Q
Sbjct: 188 Q 188


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 630 VDHFCGAFWLELLESRIEADRLRLIS 553
           +D F  ++W+ L++SR + D+ RLIS
Sbjct: 335 LDEFFVSYWVSLIKSRKQKDKKRLIS 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,131
Number of Sequences: 5004
Number of extensions: 45125
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)