Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0959
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 119 2e-27
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 4e-27
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.4
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 3.1
02_05_0956 - 33064104-33066425 28 5.5
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 28 7.2
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 28 7.2
04_01_0377 - 4970034-4970687 27 9.6
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 119 bits (286), Expect = 2e-27
Identities = 56/83 (67%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVD 174
KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV
Sbjct: 46 KGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVS 105
Query: 175 ANLSVLALVIVRKGAQEIPGLTD 243
+LSV+ LVIV+KG ++PGLTD
Sbjct: 106 QDLSVINLVIVKKGDNDLPGLTD 128
Score = 76.2 bits (179), Expect = 2e-14
Identities = 51/110 (46%), Positives = 62/110 (56%), Gaps = 8/110 (7%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 428
R GPKRASKIRKLFNL+K+DDVR+YV +R K GK+ + KAPKIQRLVTP+
Sbjct: 133 RMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLT 188
Query: 429 LQXXXXXXXXXXXXXXXXXSSEAEYANCL------HRERRNPRCVARKRS 560
LQ S AEY L RERR+ +A++RS
Sbjct: 189 LQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRS-ESLAKRRS 237
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 118 bits (284), Expect = 4e-27
Identities = 56/83 (67%), Positives = 67/83 (80%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVD 174
KGYV ++ GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV
Sbjct: 46 KGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVS 105
Query: 175 ANLSVLALVIVRKGAQEIPGLTD 243
+LSV+ LVIV+KG ++PGLTD
Sbjct: 106 QDLSVINLVIVKKGENDLPGLTD 128
Score = 77.4 bits (182), Expect = 9e-15
Identities = 52/110 (47%), Positives = 62/110 (56%), Gaps = 8/110 (7%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 428
R GPKRASKIRKLFNLSK+DDVR+YV +R K GK+ + KAPKIQRLVTP+
Sbjct: 133 RMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLT 188
Query: 429 LQXXXXXXXXXXXXXXXXXSSEAEYANCL------HRERRNPRCVARKRS 560
LQ S AEY L RERR+ +A++RS
Sbjct: 189 LQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRS-ESLAKRRS 237
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +3
Query: 258 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 416
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 514 CTEKEGIQGASPGRDQTQAVSFN 582
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 359 LGWEHAFDDITTYIIFFAKV 300
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 512 AISIFSLRGLALSETLLLQSETMTSTLQNYRGD*PLDLRCL 390
A S+ SL+G A+ LLQS + +T QN+ + LRCL
Sbjct: 513 ASSLQSLQGKAIEPLELLQSLLLPATKQNHDDVQRVALRCL 553
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 273 VWDLDGGYISISQSRNFLGTLAHNNKSQDREIG 175
VW ++S SRN LG L N +QD + G
Sbjct: 359 VWQKQINHVSCKASRNELGGLGFCNSNQDPDAG 391
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 153 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTRRLG 266
S W YC GLGS +C GC + +C ++ G
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAG 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,914,591
Number of Sequences: 37544
Number of extensions: 332321
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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