Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0959
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 151 5e-37
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 30 1.8
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 30 1.8
SB_42230| Best HMM Match : PFK (HMM E-Value=0) 29 3.2
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_10749| Best HMM Match : DB (HMM E-Value=1.5) 28 5.6
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 7.4
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 7.4
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 7.4
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 28 7.4
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 7.4
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 27 9.8
SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 27 9.8
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 151 bits (366), Expect = 5e-37
Identities = 67/81 (82%), Positives = 75/81 (92%)
Frame = +1
Query: 1 KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
KGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+
Sbjct: 13 KGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQ 72
Query: 181 LSVLALVIVRKGAQEIPGLTD 243
LSVL+LVIV+KG Q+IPGLTD
Sbjct: 73 LSVLSLVIVKKGEQDIPGLTD 93
Score = 95.5 bits (227), Expect = 3e-20
Identities = 53/110 (48%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
Frame = +3
Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQ 434
RRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKIQRLVTPVVLQ
Sbjct: 98 RRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQ 154
Query: 435 XXXXXXXXXXXXXXXXXSSEAEYANCL------HRERRNPRCVARKRSNA 566
A+YA L +E+R+ + + ++R+++
Sbjct: 155 RKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQLMKKRRASS 204
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 322 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 411
Y V + C+ PR K+L P + HLR +G
Sbjct: 50 YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 322 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 411
Y V + C+ PR K+L P + HLR +G
Sbjct: 50 YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79
>SB_42230| Best HMM Match : PFK (HMM E-Value=0)
Length = 1103
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 259 RRVHFHQSIQEFPGHPCAQ*QEPRPRDWRQQYIHELIY 146
R+VH +S++++P AQ + + RQ YIH Y
Sbjct: 208 RQVHLQKSLRDYPALKQAQPSKAKRTSKRQSYIHPSHY 245
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 204 CAQGCPGNSWID*WKCTRRLGPKRASKIRKL-FNLSKEDDVRRYVVKRVLPAKEGKENAK 380
CA+G P +W + WK L R KIR L + D+++ V +P +
Sbjct: 442 CAEGEPRGTWKESWKAMEEL--HRQGKIRSLGVSNFNVDELQELVNFATVPVSAVQNWFD 499
Query: 381 PRHKAPKIQR 410
P H+ K +R
Sbjct: 500 PFHQDRKARR 509
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 291 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 410
+ F+++KEDD+ Y++ L + K NA ++ P+ R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176
>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
Length = 616
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 558 ISSWRRTLDSFFLCASN*HIQP 493
IS+ R+ L+ FF+CASN H+ P
Sbjct: 103 ISNCRKLLERFFICASN-HLTP 123
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 464 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSI 372
L+QSE+ T T NY P++L C GF +
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 392 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 306
L G S+FF+F+ E AFD + II++A
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 392 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 306
L G S+FF+F+ E AFD + I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 392 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 306
L G S+FF+F+ E AFD + I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 392 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 306
L G S+FF+F+ E AFD + I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 276 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 386
A ++ + + DDV+ ++K ++P KEG E+ P+
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58
>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 118 CNMSGPLTSEDEHGCLSGRPVSSGILACR 32
C S L +E GC S RP+ SG +CR
Sbjct: 105 CTSSAVLPAEKGGGCTSARPIRSG--SCR 131
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 258 RLGPKRASKIRKLFNLSKEDDVRRYVVK 341
+ GP + SKI K+ ++DDV+ VVK
Sbjct: 226 KTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 214
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 392 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 306
L G S+FF+F+ E AFD + I+++A
Sbjct: 26 LAKGKSLFFAFVDLEKAFDRVPHVILWWA 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,231,535
Number of Sequences: 59808
Number of extensions: 377676
Number of successful extensions: 1099
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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