Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0959
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   140   1e-33
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  140 bits (338), Expect = 1e-33
 Identities = 63/81 (77%), Positives = 72/81 (88%)
 Frame = +1

Query: 1   KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDAN 180
           KGYV+R+ GGNDKQGFPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN
Sbjct: 46  KGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDAN 105

Query: 181 LSVLALVIVRKGAQEIPGLTD 243
           +S L+LVIV+KG  EI GLTD
Sbjct: 106 MSALSLVIVKKGDGEIEGLTD 126



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +3

Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQ 434
           R+LGPKRASKIRKLFNL+K DDV +YV+       +G      +  APKIQRL+TP  + 
Sbjct: 131 RKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPARIA 186

Query: 435 XXXXXXXXXXXXXXXXXSSEAEYANCL--HRERRNPRCVARKRSNA 566
                               A Y   L  + +  +   +AR+RS+A
Sbjct: 187 RKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAKIARRRSSA 232


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 280 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 405
           PKS+  S   KK +   MS+    +  + +KM   D  HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,985
Number of Sequences: 27780
Number of extensions: 266191
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)