Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0959
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             116   1e-26
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   116   1e-26

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  116 bits (280), Expect = 1e-26
 Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
 Frame = +1

Query: 1   KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVD 174
           KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV 
Sbjct: 46  KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVS 105

Query: 175 ANLSVLALVIVRKGAQEIPGLTD 243
            +LSVL LVIV+KG  ++PGLTD
Sbjct: 106 PDLSVLNLVIVKKGVSDLPGLTD 128



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
 Frame = +3

Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 428
           R  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK+ +    KAPKIQRLVTP+ 
Sbjct: 133 RMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----KAPKIQRLVTPLT 188

Query: 429 LQXXXXXXXXXXXXXXXXXSSEAEYANCLH---RERRNPR--CVARKRS 560
           LQ                 S  A+Y   L    +E+R+ R   +A+KRS
Sbjct: 189 LQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRS 237


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  116 bits (279), Expect = 1e-26
 Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
 Frame = +1

Query: 1   KGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVD 174
           KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV 
Sbjct: 46  KGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVS 105

Query: 175 ANLSVLALVIVRKGAQEIPGLTD 243
            +LSVL LVIV+KG  ++PGLTD
Sbjct: 106 PDLSVLNLVIVKKGENDLPGLTD 128



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 52/109 (47%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
 Frame = +3

Query: 255 RRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 428
           R  GPKRASKIRKLFNL KEDDVR YV   +R    K+GKE +    KAPKIQRLVTP+ 
Sbjct: 133 RMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----KAPKIQRLVTPLT 188

Query: 429 LQXXXXXXXXXXXXXXXXXSSEAEYANCLH---RERRNPR--CVARKRS 560
           LQ                 S  A+Y   L    +E+R+ R   +A+KRS
Sbjct: 189 LQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRS 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,102
Number of Sequences: 28952
Number of extensions: 252759
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)