Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0958
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    31   0.21 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    31   0.21 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    30   0.36 
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    28   1.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   1.9  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   4.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   7.8  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 196 LVAWSTLFLSHWKALRVFISLDVIAEVRA 110
           L  W  LFL+HWK   V I L ++ +V A
Sbjct: 239 LYMWGVLFLNHWKLTVVIIVLKLVQDVVA 267


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 287 ANQNTLGATYSTALRAIETTRSNLVWSQQRISEFTNYFESGYVED 421
           +N  TL + YS AL  +ETT+      ++  S+ TNY    Y ED
Sbjct: 338 SNLITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNED 382


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 72  SGNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILN 227
           SG +D R  +Y+A L S    NEINT++  Q   N++   T T  +V  I++
Sbjct: 636 SGYEDGR-LEYSADLASKSNRNEINTMQDVQ--ENSISHVTATQPAVKNIVD 684


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 194 QNPRQRFHDLEHNNWTSPQREQINEVSNWLTAN 292
           Q  R     L+   W +PQR+ I E  NW+  N
Sbjct: 166 QRLRSSIEGLDEAFWEAPQRQLICEQYNWMLIN 198


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 227 HNNWTSPQREQINEVSNWLTANQNTLGATYSTALRAIETTRSNLVWSQQRISE 385
           H N+ +   E I ++S W       L A+  T L      +  LVWSQ RIS+
Sbjct: 90  HYNYITQLSEDITQLS-WGYNFDLLLCASSYTKLINFSEDKPRLVWSQNRISD 141


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 335 IETTRSNLVWSQQRISEFTNYFESGYVEDVI 427
           IE  + N+ W Q+RISEF   F+  Y  D++
Sbjct: 713 IENGKVNINWPQKRISEF---FQKNYDWDLL 740


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 188 GDQNPRQRFHDLEHNNWTSPQREQINEVSNWLTANQN 298
           G  NP   F+D   +N +S  R ++   +N L   QN
Sbjct: 51  GTTNPSSNFNDSNRSNISSSLRSEMEMSNNLLKNTQN 87


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 307 SHIQHGATSYRDHAVEPRLVTAEN 378
           SHIQ G   Y+ HA+   + T E+
Sbjct: 451 SHIQLGVAQYKTHAIAESMKTFED 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,397
Number of Sequences: 5004
Number of extensions: 46548
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)