Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0958
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0100 - 25821606-25822349                                         31   1.2  
09_04_0121 - 14840494-14841276                                         28   6.2  
05_07_0335 - 29363504-29363583,29363783-29363966                       28   6.2  
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274...    28   6.2  

>02_05_0100 - 25821606-25822349
          Length = 247

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/73 (34%), Positives = 29/73 (39%)
 Frame = +1

Query: 286 GQPKHPGSHIQHGATSYRDHAVEPRLVTAENFRIHELLRVRLRGGCH*GDHRGTAYCSPD 465
           G P H G H QHG  + R  AV P    A+        R  +RGG   G  RG     P 
Sbjct: 111 GHPWHEGPHPQHGFQASRSSAVGPIRNIAK--------RAVVRGGGGGGTFRGRGGRFPS 162

Query: 466 RPTNRSSSCHPCT 504
           R    S +  P T
Sbjct: 163 RRPGASGAAAPET 175


>09_04_0121 - 14840494-14841276
          Length = 260

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 285 RPTKTPWEPHTARRYELSRPRGRTSSGHSREFQNSRTTSSQATWR 419
           R +K    P    R    +PRGR SS HS      R + SQ+  R
Sbjct: 35  RASKLARPPRRGGRANGRQPRGRGSSSHSHRAAAPRPSQSQSQMR 79


>05_07_0335 - 29363504-29363583,29363783-29363966
          Length = 87

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +2

Query: 218 DLEHNNWTSPQREQINEVSNWLTANQNTLGATYSTALRAIETTRSNLVWSQQRISEFTNY 397
           +L  N W S  R QI +V    T ++     +  T +  IET   N+VW++         
Sbjct: 12  ELNDNTWLSSFR-QITDVE---TLHELVQLGSLLTQITLIETGEDNIVWTRNAAGALLKT 67

Query: 398 FESGYVEDVIEEI 436
               Y EDVI +I
Sbjct: 68  LII-YSEDVISQI 79


>01_06_0656 -
           30926858-30927040,30927141-30927281,30927373-30927489,
           30927696-30927784,30927870-30928010,30928084-30928171,
           30928280-30928342,30928544-30928699,30928778-30928870,
           30929095-30929176,30929426-30929493,30929575-30930633
          Length = 759

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +3

Query: 72  SGNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILN 227
           S  DD   + +   +++   +N++NT  ++Q L++ + +A R +   S +L+
Sbjct: 704 SDQDDWGTKAFPGIVSAIDKANKLNTTESWQLLQHEIYRAARAVSKASAVLD 755


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,473
Number of Sequences: 37544
Number of extensions: 317109
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)