Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0958
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)                       28   6.3  

>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 191 DQNPRQRFHDLEHNNWTSPQREQINEVSNWLTANQNTLGATYSTALRAIETTRSNLVWSQ 370
           D N R RF+ +      S Q E   EVS+W+ A Q  +    S     I T +S ++++ 
Sbjct: 809 DPNHRNRFNIITSQKTFSFQVENDFEVSSWIEAVQRAIQIGLSDPAILILTPQSTILFAS 868

Query: 371 QRI 379
             I
Sbjct: 869 VEI 871


>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
          Length = 369

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 260 INEVSNWLTANQNTLGATYSTALRAIETTRSNLVWSQQRISEFTNYFE 403
           +NE+  ++  +   LG+  ++  +AIET +SN+ W +    E T + +
Sbjct: 304 LNELKQFIKDHDEILGSLRASK-KAIETIQSNINWMKAHGKEVTKWLQ 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,781,158
Number of Sequences: 59808
Number of extensions: 371892
Number of successful extensions: 1000
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)