Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0958
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02650.1 68415.m00204 reverse transcriptase-related similar t...    30   1.3  
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode...    29   2.9  
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    29   3.9  
At1g63260.2 68414.m07151 senescence-associated family protein si...    29   3.9  
At1g63260.1 68414.m07152 senescence-associated family protein si...    29   3.9  
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR...    28   5.1  
At1g03390.1 68414.m00319 transferase family protein similar to a...    28   5.1  
At5g40120.1 68418.m04867 MADS-box family protein identical to cD...    28   6.8  
At4g32300.1 68417.m04596 lectin protein kinase family protein co...    27   9.0  
At4g00360.1 68417.m00050 cytochrome P450, putative                     27   9.0  

>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278
          Length = 365

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 251 REQINEVSNWLTANQNTLGATYSTALRAIETT-RSNLVWSQQRISEFTNYFESGYVE 418
           R+ I + + WL AN+ T       A   I+T+ R +  W+          F+SGY +
Sbjct: 168 RKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQ 224


>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
           protodermal factor 2 (PDF2) identical to GP|14276060|
           protodermal factor2 (GI:14276060)
          Length = 743

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +3

Query: 60  DAIVSGNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTII 236
           D  V G D  + Q+  +  +S      + T+ AFQ L ++V  A  +LGSV+T+ N++I
Sbjct: 668 DGSVGGGDGNQHQEMVSTTSSGSCGGSLLTV-AFQILVDSVPTAKLSLGSVATV-NSLI 724


>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 191 DQNPRQRFHDLEHNNWTSPQREQINEVSNWLTANQNTL 304
           D    +RF +LEHNN+  P  +  +E++  +   QN++
Sbjct: 381 DNITNERFKELEHNNYYCPDCKVQHELTPTILEEQNSV 418


>At1g63260.2 68414.m07151 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 258

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 188 GDQNPRQRFHDLEHNNWTSPQREQINEVSNWL 283
           G  NP  R+ + + N+++S   +Q+N  SNW+
Sbjct: 102 GHTNPGLRYKEYKLNDYSSWFLKQLNNTSNWI 133


>At1g63260.1 68414.m07152 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 284

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 188 GDQNPRQRFHDLEHNNWTSPQREQINEVSNWL 283
           G  NP  R+ + + N+++S   +Q+N  SNW+
Sbjct: 102 GHTNPGLRYKEYKLNDYSSWFLKQLNNTSNWI 133


>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 285  RPTKTPWEPHTARRYELSRPRGRTSSGHSREFQNSRT 395
            RP KT W  H  +    SR R R S  + R  + SRT
Sbjct: 1157 RPKKTIWGIHRFKNLLRSRKRMRVSIKNERPLKKSRT 1193


>At1g03390.1 68414.m00319 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase from
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 461

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 84  DIRPQDYNAALTSAI-TSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGR 242
           D++P DYN  LT ++     + TL+  +    NV      + SV +++N  + +
Sbjct: 294 DVKPLDYNLRLTFSVNVRTRLETLKLRKGFYGNVVCLACAMSSVESLINDSLSK 347


>At5g40120.1 68418.m04867 MADS-box family protein identical to cDNA
           GI:32402407 MADS-box protein AGL76
          Length = 385

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 191 DQNPRQRFHDLEHNNWTSP---QREQINEVSNWLTANQNTLGATY 316
           DQN   R  D+ +NN+  P   ++E + E  N+   NQ  L   Y
Sbjct: 229 DQNQNMRMGDITNNNFQLPYFSKKEAVQESVNYFGMNQLMLKELY 273


>At4g32300.1 68417.m04596 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 821

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 385 IHELLRVRLRGGCH*GDHRGTAY 453
           IH L  VRLRG C  G HR  AY
Sbjct: 543 IHHLHLVRLRGFCAEGAHRLLAY 565


>At4g00360.1 68417.m00050 cytochrome P450, putative 
          Length = 553

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 EQINEVSNWLTANQNTLGATYSTALRAI 337
           EQ + + +W+T N    G TY T + A+
Sbjct: 44  EQRDRMHDWITENLRACGGTYQTCICAV 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,031,903
Number of Sequences: 28952
Number of extensions: 247400
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)