Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0955
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 42 1e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 0.63
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 28 1.4
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 27 2.5
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 5.8
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 26 5.8
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 7.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 7.7
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 7.7
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 303 FGSLIIGYARNPSLKQQLFSYAILGFALSE 392
F +LI G +RNPS++ LFS AILGFAL+E
Sbjct: 28 FSNLISGTSRNPSVRPHLFSMAILGFALTE 57
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 595 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 509
A R NT Q Y G HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +2
Query: 212 SLRTLTLLPN--SLVLGS--DSGSSWFRSWYW 295
S+ + ++PN + +LG+ D G SWFR+ YW
Sbjct: 401 SIAGIFVIPNIWAYILGNVLDCGMSWFRNEYW 432
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 203 PHRSLRTLTLLPNSLVLGSDSGSSWFRSWYWNSLRLPHHRL 325
P + +T+L G + + + WY+NS RL HRL
Sbjct: 53 PSSKMAFVTMLTVRAANGENEVENTQQDWYYNSTRLLVHRL 93
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 51 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 164
+ VC R C ++ + L + +C + DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 220 DIDSAAKFIGAGQRQWE*LVPELVLEQSSAPSS 318
D++SAA+FI +GQ + LVP ++ +S SS
Sbjct: 31 DVESAAEFIFSGQLEKSRLVP--IMSSTSIASS 61
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 628 LHN*INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLSTPIVYTETSYVG 479
L++ +NC+ +T +H G SK S+ WL+T + E G
Sbjct: 352 LNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAG 401
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 239 NSLVLGSDSGSSWFRSWYWNSLRLPHHR 322
N L++G +GSS + S Y+N R P R
Sbjct: 343 NFLIVGEVTGSSSYGSIYYNRGRQPDQR 370
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 125 HLQQYPPIHRWYLLSLHSSLQC 190
HL Y P WYL SLH C
Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -3
Query: 616 INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 512
I C+ + N H + HH + + SIP +T
Sbjct: 116 IRCVYSEGPSTANAHANAHHQPAQTTTTSIPTSAT 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,879
Number of Sequences: 5004
Number of extensions: 60225
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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