Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0954
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 33 0.28
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 32 0.37
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 32 0.37
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 32 0.37
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 32 0.48
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 31 0.84
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered cu... 31 1.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 30 1.5
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 30 1.5
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 30 1.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 30 1.5
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 30 1.5
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 30 1.9
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 30 1.9
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 30 1.9
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 30 1.9
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 30 1.9
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 29 2.6
Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.5
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 4.5
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 29 4.5
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 4.5
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 4.5
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.5
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 29 4.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.5
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 29 4.5
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 5.9
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 28 5.9
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 5.9
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 5.9
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 28 5.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 5.9
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 5.9
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 28 7.9
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 7.9
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 28 7.9
J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 28 7.9
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G+PGA G+ A S GE G PGPP G GA
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPPGPDGNPGA 153
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G+PGA G+ A S GE G PGPP G GA
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPPGPDGNPGA 153
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAGVVSK 246
G+PGA G+ + G + G PGPP +G G+ S+
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAGASE 259
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G GA GED + S G + G PGPP SG G
Sbjct: 180 GPEGAPGEDGN-TPSRGGVGEAGPPGPPGTSGNPG 213
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAGVVSK 246
G+PGA G+ + G + G PGPP +G G+ S+
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAGASE 269
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PG +G D + GE + G PGPP +G G
Sbjct: 190 GPPGPAGADGNTPSGGGEGPA-GPPGPPGPAGNPG 223
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 530 FGRTSDAASGANNQQKRQVSLQVI---TNAVCARTFGNNVIIASTLCVDGSNGRSTCSGD 700
FG SD G +N + + + T A C +G ++ S C ++ CSGD
Sbjct: 215 FGWGSDPGKGFDNAAFPMIQVLTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGD 273
Query: 701 SGG 709
SGG
Sbjct: 274 SGG 276
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G+PGA G+D K +GE G PGPP G G
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPPGPGGPPG 233
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 368 GDPGASGE--DVSCAKSEGELTSLGSPGPPAMSGGHGAG 258
G PGA+GE D A +GE G+PG P +G G+G
Sbjct: 167 GAPGAAGEQGDAGAAGQDGEA---GAPGGPGKNGQRGSG 202
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 293 GPPAMSGGHGAGVVSKELRRWKFCHSSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLP 120
GP GGHG VV + R K S+V S V+ GE R + H +S + +P
Sbjct: 66 GPDGGDGGHGGHVVFRASRSSKDL-STVHSIVRAQNGEFGRSKSCHGKSADHKEVEVP 122
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 374 GGGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAGV 255
G G PG G S A S G+ + G+PG P SG G G+
Sbjct: 167 GQGPPGPPGPAGS-AGSPGQAGAPGNPGSPGKSGQRGRGL 205
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 374 GGGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAGV 255
G G PG G S A S G+ + G+PG P SG G G+
Sbjct: 167 GQGPPGPPGPAGS-AGSPGQAGAPGNPGSPGKSGQRGRGL 205
>AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered
cuticle protein 2 protein.
Length = 311
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PG +GE C + GSPGPP + G G
Sbjct: 218 GQPGDNGEPGKCDEVNVAQGPPGSPGPPGLPGPDG 252
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PGA G D C ++G G PGPP M G G
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGMPGFPG 147
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PGA G D C ++G G PGPP M G G
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGMPGFPG 147
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PGA G D C ++G G PGPP M G G
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGMPGFPG 147
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PGA G D C ++G G PGPP M G G
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGMPGFPG 147
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PGA G D C ++G G PGPP M G G
Sbjct: 114 GPPGAPGWD-GCNGTDGAPGIPGRPGPPGMPGFPG 147
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G PG G D S G G GPP +G GA
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGA 239
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G PG G D S G G GPP +G GA
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGA 239
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G PG G D S G G GPP +G GA
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGA 239
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 380 DIGGGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
D G G+PG G+ S GE G PG P G G
Sbjct: 194 DGGAGNPGTPGQVRSLPSPPGEPGQPGEPGGPGEPGADG 232
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 371 GGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAG 258
GGD GA GE ++GE G PG P G HG G
Sbjct: 401 GGDQGAPGEP----GADGEPGMDGVPGNPGRDGTHGHG 434
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G PG G D + G G GPP SG GA
Sbjct: 209 GSPGRPGVDAQSQSNPGAPGQAGPQGPPGPSGAPGA 244
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -3
Query: 368 GDPGASGED-------VSCAKSEGELTSLGSPGPPAMSGGHGAG 258
G PGA+G D + GE G PGPP +G GAG
Sbjct: 186 GKPGAAGSDGEAGAPGTKTTNAPGEPGPAGPPGPPGPNGEAGAG 229
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G+ GA GE A +EG G PGPP G GA
Sbjct: 159 GNAGADGE----AGAEGPAGEAGPPGPPGPDGKPGA 190
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/70 (25%), Positives = 25/70 (35%)
Frame = -3
Query: 296 PGPPAMSGGHGAGVVSKELRRWKFCHSSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPR 117
P P G S E S SQ + DG +HQ + PQ Y + +
Sbjct: 325 PAPRVFRQEPAGGASSLEKDGGNARKSKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSN 384
Query: 116 RV*DSRPGGY 87
+ + P GY
Sbjct: 385 PLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/70 (25%), Positives = 25/70 (35%)
Frame = -3
Query: 296 PGPPAMSGGHGAGVVSKELRRWKFCHSSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPR 117
P P G S E S SQ + DG +HQ + PQ Y + +
Sbjct: 325 PAPRVFRQEPAGGASSLEKDGGNARKSKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSN 384
Query: 116 RV*DSRPGGY 87
+ + P GY
Sbjct: 385 PLWNQMPVGY 394
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGA 261
G PG G D + G G GPP SG GA
Sbjct: 188 GAPGQPGVDAQSQSTPGAPGQAGPQGPPGSSGAPGA 223
>Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical
protein R09E10.6 protein.
Length = 299
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 48 QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVL 164
++ PS + T ++ P V+D+P P+TS+ GL VL
Sbjct: 157 RQQPSKNVETMTAIEP-VEVMDSPTSPVTSSNSGLITVL 194
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 374 GGGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
GGG PG G GE G PG P GG G
Sbjct: 286 GGGQPGPQGPPGDDGHP-GEDGGAGGPGQPGQDGGSG 321
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G+PG+ GE ++ G G PGPP +GG G
Sbjct: 215 GEPGSPGEPGPDGRA-GHPGRNGPPGPPGDNGGQG 248
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 371 GGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
GG PG +G+ S G+ G PG P G G
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSPGEPGPDG 227
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G+PG+ GE ++ G G PGPP +GG G
Sbjct: 215 GEPGSPGEPGPDGRA-GHPGRNGPPGPPGDNGGQG 248
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 371 GGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
GG PG +G+ S G+ G PG P G G
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSPGEPGPDG 227
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 414 HNDVAIINHNHVGFTNNIQRINLASGSNN 500
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 267 VTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAII 434
VTAAHC + Q R F N + + +H YN T ND+A++
Sbjct: 77 VTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 414 HNDVAIINHNHVGFTNNIQRINLASGSNN 500
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 414 HNDVAIINHNHVGFTNNIQRINLASGSNN 500
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 368 GDPGASGEDV-SCAKSEGELTSLGSPGPPAMSGGHG 264
G+PG G+D S GE G PGPP +G G
Sbjct: 204 GEPGRPGDDAPSEPLIPGEPGPQGPPGPPGQAGPDG 239
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 27 RWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 149
R RP + +++ + +TTT SVS P++ D P +V G
Sbjct: 259 RGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVTG 299
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 368 GDPGASGED-VSCAKSEGELTSLGSPGPPAMSGGHGA 261
G PGA G + V+ G G PGPP G GA
Sbjct: 235 GQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSGGA 271
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 374 GGGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
GGG G G CA ++ G PGPP +G G
Sbjct: 114 GGGGGGGGGGGCHCA-AQASGCPAGPPGPPGEAGTDG 149
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 368 GDPGASGEDVSCAK-SEGELTSLGSPGPPAMSGGHGAGVVSKE 243
G PG GE + S G G PGPP + G G+ SKE
Sbjct: 259 GPPGLDGETIDGEDGSPGLPGPPGPPGPPGLHGSPGSYGESKE 301
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 368 GDPGASGE--DVSCAKSEGELTSLGSPGPPAMSGGHGAG 258
G PG G +V A G+ G PGPP GG G G
Sbjct: 148 GRPGPRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEG 186
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 368 GDPGASGE--DVSCAKSEGELTSLGSPGPPAMSGGHGAG 258
G PG G +V A G+ G PGPP GG G G
Sbjct: 148 GRPGPRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEG 186
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 536 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGLS 715
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGGSQ 2130
Query: 716 --HRQRR 730
H+Q++
Sbjct: 2131 QPHQQQQ 2137
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 536 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGLS 715
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGGSQ 2130
Query: 716 --HRQRR 730
H+Q++
Sbjct: 2131 QPHQQQQ 2137
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G+PG+ GE A S G +G PGP G G
Sbjct: 162 GNPGSLGESSLGAGSPGPPGGVGPPGPNGTPGAPG 196
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSE-GELTSLGSPGPPAMSGGHGAG 258
G PG G++ S G G PGPP +G G G
Sbjct: 239 GQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGG 276
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G PGA G D G TS PGPP +G G
Sbjct: 213 GQPGAPGPDGQ--PGAGGTTSTNQPGPPGPAGPPG 245
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAG 258
G PG G+ A ++G + + G+PGP ++G G G
Sbjct: 233 GPPGPEGD----AGNDGPVGAAGAPGPDGINGFQGPG 265
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 63 NSTTTSRSVSPGPRVLDAPRKPLTSTVP 146
+S TT + +P P+ L +PR P TS P
Sbjct: 447 SSATTLTAQAPPPQALTSPRTPSTSASP 474
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 63 NSTTTSRSVSPGPRVLDAPRKPLTSTVP 146
+S TT + +P P+ L +PR P TS P
Sbjct: 508 SSATTLTAQAPPPQALTSPRTPSTSASP 535
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 63 NSTTTSRSVSPGPRVLDAPRKPLTSTVP 146
+S TT + +P P+ L +PR P TS P
Sbjct: 472 SSATTLTAQAPPPQALTSPRTPSTSASP 499
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSG 273
G PG GE S G++ +G PGPP G
Sbjct: 202 GQPGHPGEQ----GSSGQIGKIGEPGPPGEKG 229
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G+PGA G D K+ + G PGPP G +G
Sbjct: 231 GNPGAPGNDGEAGKNG----NAGRPGPPGHPGKNG 261
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHG 264
G+PGA G D K+ + G PGPP G +G
Sbjct: 225 GNPGAPGNDGEAGKNG----NAGRPGPPGHPGKNG 255
>J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein.
Length = 324
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 368 GDPGASGEDVSCAKSEGELTSLGSPGPPAMSG 273
G PG GE S G++ +G PGPP G
Sbjct: 202 GQPGHPGEQ----GSSGQIGKIGEPGPPGEKG 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,926
Number of Sequences: 27780
Number of extensions: 346609
Number of successful extensions: 2088
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2059
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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