Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0954
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15280.2 68414.m01829 glycine-rich protein 30 1.4
At1g15280.1 68414.m01828 glycine-rich protein 30 1.4
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain... 29 2.4
At4g30180.1 68417.m04291 expressed protein 29 2.4
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 3.2
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 29 3.2
At2g28070.1 68415.m03408 ABC transporter family protein 29 3.2
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 29 4.2
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 29 4.2
At4g01985.1 68417.m00265 expressed protein 28 5.5
At4g07470.1 68417.m01149 hypothetical protein 28 7.3
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 28 7.3
At1g11520.1 68414.m01323 pliceosome associated protein-related c... 28 7.3
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At2g32820.1 68415.m04017 hypothetical protein and genscan 27 9.6
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 27 9.6
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase... 27 9.6
>At1g15280.2 68414.m01829 glycine-rich protein
Length = 585
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Frame = -3
Query: 374 GGGDPGASGEDVSCAKSEGELTSLGSP--GPPAMSGGHGAGVVSKELRRWKFCHSSVRSQ 201
G G G + S LTS G P A+S G G LR HS Q
Sbjct: 176 GHGRGRGQGRGYARGSSSNTLTSSGQQIYVPKAVSRGRGPRKSDTPLRNENQAHSEQSKQ 235
Query: 200 VQQDGGEHQRLRQNHPQSWYRRSQRLPRR 114
++ G Q R+ P RRS P +
Sbjct: 236 LRNSNGS-QNSREKMPHLDSRRSPTAPAK 263
>At1g15280.1 68414.m01828 glycine-rich protein
Length = 584
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Frame = -3
Query: 374 GGGDPGASGEDVSCAKSEGELTSLGSP--GPPAMSGGHGAGVVSKELRRWKFCHSSVRSQ 201
G G G + S LTS G P A+S G G LR HS Q
Sbjct: 175 GHGRGRGQGRGYARGSSSNTLTSSGQQIYVPKAVSRGRGPRKSDTPLRNENQAHSEQSKQ 234
Query: 200 VQQDGGEHQRLRQNHPQSWYRRSQRLPRR 114
++ G Q R+ P RRS P +
Sbjct: 235 LRNSNGS-QNSREKMPHLDSRRSPTAPAK 262
>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein predicted proteins,
Arabidopsis thaliana and Drosophila melanogaster
contains Pfam profile PF00564: PB1 domain
Length = 531
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 414 HNDVAIINHNHVGFTNNIQRINLASGSNNFAGLGPGLPASEGPPMLLREP 563
H D + N G+ + + G +GP + S GPPM L+EP
Sbjct: 415 HPDAYMEQQNQPGYNVVQPQPTFSGGPQVMTSVGPQVMTSVGPPMGLQEP 464
>At4g30180.1 68417.m04291 expressed protein
Length = 158
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 6 SSQQY*WRWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRK 125
S+Q++ W S SN TTT+ S S G R+L+ P K
Sbjct: 62 SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 525 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 656
P PP PT N A +S P P AP RL T + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 205 HKSSKMGVSTSVCGRTTHNPGTVEVSGFLGASKT 104
HK+ MG STS+ G T+H+P V G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327
>At2g28070.1 68415.m03408 ABC transporter family protein
Length = 730
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 380 DIGGGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAGVVSK 246
+ GGGD + S ++ S PP GG G GVV K
Sbjct: 64 EAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRK 108
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 57 PSNSTTTSRSVSPGPRVLDAPRKPL 131
PS+STTT+R+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 57 PSNSTTTSRSVSPGPRVLDAPRKPL 131
PS+STTT+R+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -3
Query: 374 GGGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAG 258
GGG GA G A G G G SGG G G
Sbjct: 199 GGGTVGAGGRGSGGASGGGGTVGAGGRGSGGASGGVGVG 237
>At4g07470.1 68417.m01149 hypothetical protein
Length = 150
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 145 QDCGWFCRKRWCSPPSCWTCDRTDEWQN 228
+DCG+ KRWC+ P C D+ E +N
Sbjct: 85 RDCGF---KRWCAVPLCDEFDKIKEEKN 109
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 474 INLASGSNNFAGLGPGLPASE 536
++L +N FAG GP LP SE
Sbjct: 543 MSLGYDTNKFAGFGPALPVSE 563
>At1g11520.1 68414.m01323 pliceosome associated protein-related
contains similarity to spliceosome associated protein
SAP 145 GI:1173904 from [Homo sapiens]
Length = 196
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 560 LPKQHRRSFRSRQPRPKSSKVVASTG*VDALDV 462
LPK+ R R R+ R + K AS VDA+DV
Sbjct: 57 LPKKSREIDRRRRRRKRKKKNKASQADVDAMDV 89
>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 301
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 517 LGCRLRKDLRCCFGSQQPTKTPSEPP 594
L C KDLR CF P P PP
Sbjct: 10 LSCLQFKDLRFCFRQYPPPPPPPPPP 35
>At2g32820.1 68415.m04017 hypothetical protein and genscan
Length = 333
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 302 GSPGPPAMSGGHGAGVVSKELRRWKFCHSSVRSQVQQDGGEHQRLR 165
GS P SG GV+ K LR+ FC SV S+ + +HQ ++
Sbjct: 186 GSKNP--RSGAGETGVIKKILRKPDFCCKSVPSRPPLNMKKHQPVK 229
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 371 GGDPGASGEDVSCAKSEGELTSLGSPGPPAMSGGHGAG 258
GG PGA G + G G+ PA+ GG GAG
Sbjct: 134 GGGPGA-GSALGGGAGAGPALGGGAGAGPALGGGAGAG 170
>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK9) mitogen-activated protein
kinase kinase (MAPKK) family, PMID:12119167
Length = 310
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 569 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTC 691
+++RQ++L++ + R F + A+T V G NG S C
Sbjct: 5 RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,564
Number of Sequences: 28952
Number of extensions: 329921
Number of successful extensions: 1429
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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