Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0953
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4PI56 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_Q58KC0 Cluster: ORF271; n=2; Leptospirillum ferrooxidan...    33   4.9  
UniRef50_Q4YNQ4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  

>UniRef50_Q4PI56 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 553

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -3

Query: 213 HCNAFSFSSRTRYAFGVLPPAPPCPRHYRHRTPRT-----SAACSC 91
           H  +F+ SS  R +  +LP  PP P  Y H TP       S++C+C
Sbjct: 182 HTASFAASSNPRSSVRILPSPPPAPIGYLHPTPSAITANGSSSCAC 227


>UniRef50_Q58KC0 Cluster: ORF271; n=2; Leptospirillum
           ferrooxidans|Rep: ORF271 - Leptospirillum ferrooxidans
          Length = 271

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 171 FGVLPPAPPCPRHYRHRTPRTS-AACSCW 88
           +G LPPAP   R  +   PRT  AAC CW
Sbjct: 171 WGFLPPAPGLERPVQRSCPRTGRAACVCW 199


>UniRef50_Q4YNQ4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 145

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +2

Query: 488 VYEYYERYEHIYCLWGEGTC*DITYFFTSRAYSRYIIETIFYFSSRNQQKMC*VLKIGNV 667
           +Y+Y  +YEH   L G+G    I +FF S   ++     +F     N++K+   L IG+ 
Sbjct: 14  LYKYIHQYEHCIILIGQGAY-MIAFFFNSNV-NKKKHTNVFQIDGENEKKVIHFLNIGHN 71

Query: 668 IWI 676
           I I
Sbjct: 72  IAI 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,610,397
Number of Sequences: 1657284
Number of extensions: 10183911
Number of successful extensions: 27008
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26982
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)