Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0953
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.19 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   3.1  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   3.1  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   5.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   9.5  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = -3

Query: 219 GIHCNAFSFSSRTRYAFGVLPPAPPCPRHYRHRTPRTSAACSC 91
           G+H    S  S T  A G LPP  P PR  R  T R  A C C
Sbjct: 255 GLHATG-SAPSPTAGAGG-LPPQVPSPRSQRRYTGR--ATCDC 293


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 174 AFGVLPPAPPCPRHYRHRTP 115
           AF V  P PP P H   R P
Sbjct: 730 AFDVKLPPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 174 AFGVLPPAPPCPRHYRHRTP 115
           AF V  P PP P H   R P
Sbjct: 622 AFDVKLPPPPHPHHQPPRNP 641


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 676 YPYYITNFKYLTHFLLIS*TKIKY 605
           YP  + + K L HFL+++  K ++
Sbjct: 168 YPRMLISTKLLAHFLILTVLKARF 191


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 676 YPYYITNFKYLTHFLLIS*TKIKY 605
           YP  + + K L HFL+++  K ++
Sbjct: 168 YPRMLISTKLLAHFLILTVLKARF 191


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/44 (18%), Positives = 22/44 (50%)
 Frame = +1

Query: 310 DGPHTARNIHWLQAGLELIPLEVERKVFKMVRFRMFRSSWDYCY 441
           +G HT  ++H+    +++   + +R  + M+      + +D+ Y
Sbjct: 43  EGYHTPESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVY 86


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 477 IYF*RKIVNNYKITVVP 427
           + F RK++ N+ I ++P
Sbjct: 115 VIFERKVMKNFAILIIP 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,000
Number of Sequences: 336
Number of extensions: 2909
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)