Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0953
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 27/88 (30%), Positives = 40/88 (45%)
 Frame = +3

Query: 267 IMTTKPRSLPPDCQRWPSYCKKHTLASSWFGINTTRS*KKSVQNGTFQNVQEFMGLLLSC 446
           +  T P +LP      P   KK +L+ S F ++  R     +   T   +  F  LLL  
Sbjct: 65  LFCTHPDTLPTSLSINP---KKLSLSFS-FPLSQKRPFPNFLHPFTGSELSLFRCLLLFF 120

Query: 447 NYLLFFFKNIFKRAFMSIMSVMSIFIVF 530
            +LLFF    F  +F+  +S   IFIV+
Sbjct: 121 FFLLFFLSFSFSFSFLFFLS--QIFIVY 146


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 159 PPAPPCPRHYRHRTPRTSAACS 94
           PPAPP PR    RT   S+  S
Sbjct: 224 PPAPPKPRRLAARTSSNSSGVS 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,693
Number of Sequences: 5004
Number of extensions: 45575
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)