Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0953
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    29   4.1  
AC024859-5|AAK29972.3|  360|Caenorhabditis elegans Hypothetical ...    28   5.4  

>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 354 FGINTTRS*KKSVQN-GTFQNVQEFMGLLLSCNYLLFFFKNIFKRAFMSIMSVMS 515
           FG ++T S + SV +      +       LSC+Y+L +  N +  AF S    MS
Sbjct: 643 FGGSSTLSRRSSVNSVDILSEILILQTSYLSCSYILLYLWNFYSLAFASNFKTMS 697


>AC024859-5|AAK29972.3|  360|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.7 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = +1

Query: 292 YH--LTARDGPHTARNIHWLQAGLELIPLEVERKVFKMVRFRMFRSSWDYCYLVI-IYYF 462
           YH  L++R   +T R I  L   +  + LE E++VFK++ F+M  S  D C + + +  F
Sbjct: 177 YHDSLSSRQVVNTLRKIG-LPYTISAV-LESEQRVFKLIGFKMPDSPLDACEMALKVLTF 234

Query: 463 SLK 471
           ++K
Sbjct: 235 TMK 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,107
Number of Sequences: 27780
Number of extensions: 254871
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)