Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0953
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.3  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 202 IFLFFSNSIRFRR 164
           IFL+F++ +RFRR
Sbjct: 23  IFLYFNSLVRFRR 35


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
 Frame = -3

Query: 162  LPPAP-----PCPRHYRHRTPRTSAACSCWQLT*LRVD*HLIHHLVPNHRLPSPKK 10
            LPP P      C R  R    R+  + S W     R     ++H  PN R P P +
Sbjct: 1653 LPPVPGSNYNTCDRIKRGTVIRSIRSHSTWDPR--RHMYEELNHCAPNRRCPPPPR 1706


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 569 TSRAYSRYIIETIFYFSSRN 628
           T+R Y+  ++E   Y  SRN
Sbjct: 467 TTRFYTACVVEAFDYLHSRN 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,665
Number of Sequences: 438
Number of extensions: 3433
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)