Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0953
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55720.1 68418.m06946 pectate lyase family protein similar to...    29   3.8  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    29   3.8  

>At5g55720.1 68418.m06946 pectate lyase family protein similar to
           pectate lyase 1 GP:6606532 from [Musa acuminata]
          Length = 392

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -3

Query: 216 IHCNAFSFSSRTRYAFGVLPPAPPCPRHYRHRTPRTSAACSC 91
           I C  F F   T +AF    P PP  R         S A SC
Sbjct: 3   IVCTFFLFLLNTSFAFAFAIPKPPIVRRLSTTVTSNSTASSC 44


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 500 YERYEHIYCLW 532
           Y  YEH+YCLW
Sbjct: 338 YHNYEHVYCLW 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,688,995
Number of Sequences: 28952
Number of extensions: 224492
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)