Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0952
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    30   0.42 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    29   0.97 
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    27   3.0  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   3.9  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 342  IKILHQTIRSAINSHAVFAHLHSVTKYLIMFT*EYDHLYNKLMTHKVP*LVKDYIQQGIM 163
            I +L +      N+    AH  S  +YL   T  Y+H+  K  +H++  + +D I+QG +
Sbjct: 1048 IHLLRELEEEKSNTQRKIAHFESRRRYL---TNLYEHIVLKAESHQICIICRDIIKQGFI 1104


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 369 SHSPTQMNDIKILHQTIRS-AINSHAVFAHLHSVTK 265
           S  PTQ N    +H T+RS ++NS+   AH  +V++
Sbjct: 741 SSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSR 776


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 322 NKVRNQLSRCVRTFA---QRHKIFDHVHLRIRSSLQ*INDPQSALTSERL 182
           N+V+N++SR  +TFA    +H  F  +   +R  L+  ND  S+ T +RL
Sbjct: 243 NEVKNRISRLQKTFADLENQHHSFQQICQTLRKRLE--ND--SSTTKQRL 288


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 490 YLSIDLVLNVMLQACCVVVISDFRPVPTVIIEIDGIKNVEHAEKSGLYYIKSLSINIE 663
           YLS   ++ + LQA    V+S F+     I+  + I   +H  KSG   +K L+  +E
Sbjct: 672 YLSETWIIELFLQAIREEVVSKFQNFYESIVANEDITGSDH-NKSGTTSLKHLNEYVE 728


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 FECYVTSMLCSCNFRFSPG 566
           F+C V ++ C C F FS G
Sbjct: 39  FDCIVVTIYCGCLFWFSNG 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,876
Number of Sequences: 5004
Number of extensions: 53418
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)