Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0952
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0995 + 7875273-7875495,7876196-7876274,7876422-7876536,787...    31   1.3  
04_04_1286 + 32387687-32387908,32388046-32389494                       29   5.4  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   5.4  
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562...    28   9.4  
07_03_0871 - 22183149-22183232,22183706-22183964,22184012-221840...    28   9.4  

>01_01_0995 +
           7875273-7875495,7876196-7876274,7876422-7876536,
           7878507-7878761
          Length = 223

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 529 ACCVVVISDFRPVPTVIIEIDGIKNVEHAEKSGLYYIKSL-SINIEWEGRRSK 684
           AC +  I   R +P V IE+D +    H ++ GL+ +KS   ++ +WE +R +
Sbjct: 135 ACAIADIDTIRLIP-VHIEMDDVL-AWHYDEKGLFLVKSAYKVHRDWERQRQR 185


>04_04_1286 + 32387687-32387908,32388046-32389494
          Length = 556

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = -2

Query: 451 VNNIRK*HLPEIFLSVTLIFTLYHNISVSLTNTNE*YKNTASNNKVRNQLSRCVRTFAQR 272
           +N++R  ++PEI+  +  +  L  +I V   + +E +    + N V   +  C+ TF + 
Sbjct: 362 LNHLRF-YIPEIYPELRKVVFLDDDIVVQ-KDLSELFTINLNGN-VMGAVETCMETFHRF 418

Query: 271 HKIFDHVHLRIRS 233
           HK  +H H  IR+
Sbjct: 419 HKYLNHSHPLIRA 431


>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 598 KNVEHAEKSGLYYIKSLSINIEWEGRRS 681
           KNV H E+  L Y ++ S  I W+ R S
Sbjct: 120 KNVAHEERQALVYRQNESFTIRWDTRTS 147


>08_01_0652 +
           5627226-5628395,5628885-5629040,5629115-5629304,
           5629590-5629729
          Length = 551

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 384 TITFQSHSPTQMNDIKILHQTIRSAINSHAVFAHL 280
           T+  QS  P ++ D    +  IR+AIN +A F HL
Sbjct: 115 TLRLQSSDPDELFDNDDANAWIRTAINRNARFIHL 149


>07_03_0871 -
           22183149-22183232,22183706-22183964,22184012-22184091,
           22184308-22184667,22184757-22184900,22184986-22185141,
           22185236-22185401,22185480-22185512,22186188-22186270,
           22186341-22186443,22186540-22186628
          Length = 518

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 342 YHSFVLVSETEMLWYNVKINVTLRNISGKCYFLILLTS 455
           Y  FVL +     ++  K+N  LRN++G  Y L  L+S
Sbjct: 170 YQPFVLRTTAIFTYHEAKVNTRLRNLAG--YTLFFLSS 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,527
Number of Sequences: 37544
Number of extensions: 290173
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)