Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0952
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_14998| Best HMM Match : Orthopox_35kD (HMM E-Value=6.6)             30   1.8  
SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)                 29   3.1  
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    28   9.5  
SB_7358| Best HMM Match : bZIP_1 (HMM E-Value=1.7)                     28   9.5  

>SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 241 FLSEHDQIFCDAVQMCEHSVRVDCGPYCLMQYFYIIHLC 357
           F S+H+++  D  + CE+ V VD G  CL  Y   +H C
Sbjct: 95  FDSDHEEVSGDDAEACEYRV-VDLG--CLSSYLSDVHRC 130


>SB_14998| Best HMM Match : Orthopox_35kD (HMM E-Value=6.6)
          Length = 413

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 312 RTLLFDAVFLYHSFVLVSETEMLWYNVKINVTLRNISG 425
           RT  F+ V L+ SFV+  ET+ +  N  +N+  R++SG
Sbjct: 105 RTFFFEQVNLHKSFVINKETDSI-INESVNLPQRSMSG 141


>SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 241 FLSEHDQIFCDAVQMCEHSVRVDCGPYCLMQYFYIIHLC 357
           F S+H+++  D  + CE+ V VD G  CL  Y   +H C
Sbjct: 95  FDSDHEEVSGDDAEACEYRV-VDLG--CLSSYLSDVHRC 130


>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 241 FLSEHDQIFCDAVQMCEHSVRVDCGPYCLMQYFYIIHLC 357
           F S+H+++  D  + CE+ V VD G  CL  Y   +H C
Sbjct: 95  FDSDHEEVSGDDAEACEYRV-VDLG--CLSSYLSDVHRC 130


>SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)
          Length = 298

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 348 SFVLVSETEMLWYNVKINV-TLRNISGKCYFLILLT 452
           SFV+ SE+E  ++NVK N  TL  + G  +FL   T
Sbjct: 146 SFVMFSESESAYFNVKRNENTLAIVDGLVHFLTCYT 181


>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = -2

Query: 385 YHNISVSLTNTNE*YKNTASNNKVRNQLSRCVRTFAQRHKIFDHVHLRIRSSLQ*INDPQ 206
           ++ +   L++      N   +NK RN+L +C      +H       L  RSS +  +  +
Sbjct: 85  FNELQTLLSSLKSSCNNFEHSNKTRNELYKCALN-DSKHLARTKKRLTYRSSKR--SRRR 141

Query: 205 SALTSERLHSTRHHVKL 155
             L  ++ H TRH + +
Sbjct: 142 KLLKKDKFHHTRHIINM 158


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 1/125 (0%)
 Frame = -2

Query: 373 SVSLTNTNE*YKNTASNNKVRNQLSRCVRTFAQRHKIFDHVHLRIRSSLQ*INDPQSALT 194
           S  L  T E   ++A  + +R  L+        R  + D  HL    S Q     +    
Sbjct: 462 SAHLHETRERLTDSAHLHAIREPLTDSAHLHTTREGLTDSAHLHATHSTQLHTTRERLTD 521

Query: 193 SERLHSTRHHVKLL*LLDIRY*HA-RPHLTNFIHSFKLIIKLNSLTITHAATTFRFLLRN 17
           S  LH TR       L D  + HA R  +T+  H      ++      HA    R  L +
Sbjct: 522 SAHLHETRER-----LTDSTHLHATRERITDSAHLHTTRERVTDSAQLHAT---RKRLTD 573

Query: 16  NTHNH 2
           + H H
Sbjct: 574 SAHLH 578


>SB_7358| Best HMM Match : bZIP_1 (HMM E-Value=1.7)
          Length = 227

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -2

Query: 385 YHNISVSLTNTNE*YKNTASNNKVRNQLSRCVRTFAQRHKIFDHVHLRIRSSLQ*INDPQ 206
           ++ +   L +      N   +NK RN+L +CV     +H       L  RSS +  +  +
Sbjct: 77  FNELQTLLNSLKSSCNNFEYSNKTRNELYKCVLN-DSKHLARTKKRLTNRSSKR--SRRR 133

Query: 205 SALTSERLHSTRH 167
             L +++ H TRH
Sbjct: 134 KLLKNDKFHHTRH 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,252,848
Number of Sequences: 59808
Number of extensions: 378941
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)