Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0952
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical p...    29   4.8  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    29   4.8  

>Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical
           protein Y57G11C.1 protein.
          Length = 633

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 406 VTLIFTLYHNISVSLTNTNE*YKNTASNNKVRNQLS--RCVRTFA 278
           +TL+ T Y+ ++V   +  E     ASN  V   LS  R VR+FA
Sbjct: 207 ITLLMTRYYGLAVEKLSEKENDATAASNETVEEVLSAIRTVRSFA 251


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 669 LPFNINGQGFNI--IQTTFFCMFNILYSINFYYH 574
           L  NIN    NI  I   FF +FN+LY I   +H
Sbjct: 88  LVVNINSSQINIVLIALLFFALFNVLYIITQAFH 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,786
Number of Sequences: 27780
Number of extensions: 299105
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)