Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0952
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12080.2 68418.m01415 mechanosensitive ion channel domain-con...    29   2.6  
At5g12080.1 68418.m01414 mechanosensitive ion channel domain-con...    29   2.6  
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con...    28   7.9  
At5g02700.1 68418.m00208 F-box family protein low similarity to ...    28   7.9  
At2g20810.1 68415.m02448 glycosyl transferase family 8 protein c...    28   7.9  

>At5g12080.2 68418.m01415 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 637 YNTNHFFLHVQHSLFHQFLL 578
           +N N+FF  +Q S+FHQ++L
Sbjct: 312 FNVNNFFDRIQDSVFHQYVL 331


>At5g12080.1 68418.m01414 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 637 YNTNHFFLHVQHSLFHQFLL 578
           +N N+FF  +Q S+FHQ++L
Sbjct: 312 FNVNNFFDRIQDSVFHQYVL 331


>At5g19520.1 68418.m02325 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 742

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 637 YNTNHFFLHVQHSLFHQFLL 578
           +N  +FF  +Q S+FHQ++L
Sbjct: 324 FNVRNFFERIQESVFHQYVL 343


>At5g02700.1 68418.m00208 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 100 IHSFKLIIKLNSLTITHAATTFRFLLRNNTHN 5
           I SFKL++ LNS T+    +   F L  N  N
Sbjct: 90  ITSFKLVMDLNSNTVPQVDSWIEFALSRNVQN 121


>At2g20810.1 68415.m02448 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 536

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = -2

Query: 451 VNNIRK*HLPEIFLSVTLIFTLYHNISVSLTNTNE*YKNTASNNKVRNQLSRCVRTFAQR 272
           +N++R  ++PE+F ++  +  L  ++ V    ++    +   N  V   +  C+ TF + 
Sbjct: 342 LNHLRF-YIPEVFPALKKVVFLDDDVVVQKDLSS--LFSIDLNKNVNGAVETCMETFHRY 398

Query: 271 HKIFDHVHLRIRS 233
           HK  ++ H  IRS
Sbjct: 399 HKYLNYSHPLIRS 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,296
Number of Sequences: 28952
Number of extensions: 255268
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)