Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0951
(657 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 28 0.090
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 24 1.1
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 24 1.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 1.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 1.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.9
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 7.8
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 7.8
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 27.9 bits (59), Expect = 0.090
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 180 PTLGTPLTAVLYRPLARPRQST 115
P +GTP T ++Y+P P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 357 TTPPGPSRIQTGNPVGSATSLSSS 286
TTP PSR Q+ + SA ++S+S
Sbjct: 530 TTPVLPSRFQSHPSIDSANTISNS 553
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 512 REVLTLQPGWGFLPPLG*KSP 450
R+ + LQPG F PLG + P
Sbjct: 461 RDAVYLQPGMSFGEPLGLRRP 481
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 1.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 130 TTPVHNNNVAVGDGQQGGAD 71
+ P +N + GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 1.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 130 TTPVHNNNVAVGDGQQGGAD 71
+ P +N + GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 434 LTALLMVT-FTPTVAETPNRVAELVPLSQSSLRIVRLHCSS 553
+T LL +T F VAET +V++ +PL S + +S
Sbjct: 230 VTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVAS 270
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 434 LTALLMVT-FTPTVAETPNRVAELVPLSQSSLRIVRLHCSS 553
+T LL +T F VAET +V++ +PL S + +S
Sbjct: 230 VTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVAS 270
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 434 LTALLMVT-FTPTVAETPNRVAELVPLSQSSLRIVRLHCSS 553
+T LL +T F VAET +V++ +PL S + +S
Sbjct: 230 VTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVAS 270
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 434 LTALLMVT-FTPTVAETPNRVAELVPLSQSSLRIVRLHCSS 553
+T LL +T F VAET +V++ +PL S + +S
Sbjct: 298 VTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVAS 338
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 281 VTLDDRLVADPTGLPVW 331
+TLDD++ P P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 281 VTLDDRLVADPTGLPVW 331
+TLDD++ P P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,128
Number of Sequences: 438
Number of extensions: 5929
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -