Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0951
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37925.1 68415.m04655 copper transporter family protein simil... 31 0.89
At5g45040.1 68418.m05522 cytochrome c6 (ATC6) identical to c6 ty... 29 2.1
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 29 2.1
At5g12340.1 68418.m01452 expressed protein ; expression supporte... 29 2.7
At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 29 2.7
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 29 2.7
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 4.8
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 4.8
At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N... 28 6.3
At1g55325.1 68414.m06320 expressed protein 28 6.3
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 27 8.3
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 20 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 160
V+V WN+ + T RP+LL + +C V+ W G G+Y A+
Sbjct: 8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59
>At5g45040.1 68418.m05522 cytochrome c6 (ATC6) identical to c6 type
cytochrome [Arabidopsis thaliana]
gi|19571824|emb|CAD27418
Length = 175
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -1
Query: 294 SSSVTDNVRAQAEAIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTAVL--YRPLARPRQ 121
+SS T N+ ++ + +L P+ ++ K L L PLTAVL P+ P +
Sbjct: 8 ASSFTSNLFCSSQQVNGRGKELKNPISLNHNKDLDFLLKKLAPPLTAVLLAVSPICFPPE 67
Query: 120 STTITL 103
S TL
Sbjct: 68 SLGQTL 73
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -2
Query: 473 PPLG*KSP*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPA- 297
PPL +SP + + P PP APA LPP P P + LPP+
Sbjct: 1126 PPLPHESPPSPPPQPPSSPPPPSSPPQLAPAPPPSDHCLPPPTAPLA--PAQSIALPPSS 1183
Query: 296 -CRPALPTTCAPKLKQSSGLDP 234
RP++P+ P L G P
Sbjct: 1184 ITRPSMPS--HPSLPLQPGFAP 1203
>At5g12340.1 68418.m01452 expressed protein ; expression supported
by MPSS
Length = 220
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 309 SATSLSSSVTDNVRAQAEAIKWTRPQLPPPLLMSQ 205
S S+ +S +NVR+ + +T P PPP SQ
Sbjct: 96 SCLSIFNSNLENVRSNTPPLNFTAPSSPPPFEYSQ 130
>At3g20460.1 68416.m02590 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 488
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 53 SAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV-----WLIN 217
SA+N+++ A +AV+ V+ W+ LA ++ VP V +F+G F + WL
Sbjct: 181 SAINSLVMCASVAVTYLLGSVISWQKLA------LISTVPCVFEFVGLFFIPESPRWLSR 234
Query: 218 NG 223
NG
Sbjct: 235 NG 236
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 29.1 bits (62), Expect = 2.7
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = -1
Query: 312 GSATSLSSSVTDNVRAQAEAIKWTRPQL--PPPLLMSQTKKLPRNCPTLGTPLTAVLYRP 139
G + LSS + V E IK RP+L + S +KL CP +T +L R
Sbjct: 367 GCLSGLSSKYDEIVNI--ERIK--RPELLTAKSSMTSNERKLAGLCPLNAKEVTRLL-RA 421
Query: 138 LARPRQSTTITLQSETASKAGRIMVFTAEFPLLFQPWTI 22
L PR + E + T+EFP L+ + I
Sbjct: 422 LGAPRDARIYWAGGEPLGGKEALKPLTSEFPHLYNKYDI 460
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 419 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 261
PP++ AST P+ R +P P P G+ P + PP+ R PT P+
Sbjct: 175 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 229
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 419 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 261
PP++ AST P+ R +P P P G+ P + PP+ R PT P+
Sbjct: 174 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 228
>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
NADPH oxidase, putative similar to respiratory burst
oxidase protein A from Arabidopsis thaliana, gb:AF055353
[gi:3242781], protein D [gi:3242789]; contains Pfam
profile PF01794 Ferric reductase like transmembrane
component
Length = 849
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = -1
Query: 390 SSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEAIKWTRPQLPPPLLM 211
SS + G + +T P+ GN V +S+ ++ +++ Q +KW + L
Sbjct: 16 SSSEILSGSLPSTYRNPAMENVGNAVDDGSSVKNNPKLDMQKQNGLVKWFKKCLTMVSGE 75
Query: 210 SQTKKLPRNCPTLGTPL 160
S+ +L R+ T G L
Sbjct: 76 SKAPRLDRSKSTAGQAL 92
>At1g55325.1 68414.m06320 expressed protein
Length = 1921
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -1
Query: 501 NSATRLGVSATVGVKVTMSNAVKNTE-KTTVGVDCLHISSCVTVQGLVVT 355
NS+T+ GVS ++ K + +NAVK + K T G+ + +S+ ++ + L+ T
Sbjct: 721 NSSTKEGVSQSIHSKHSAANAVKVVQGKKTDGISAV-VSTLLSSKTLLAT 769
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -1
Query: 633 PC*RYLQSTDCSEPD*GCYIVCQRNDCDEQWRRTIRRLDCERGTNSATRLGVSATVGVKV 454
P YL+ T S PD G + N D+ ++ +RR +R +S T SA+ ++
Sbjct: 48 PLPNYLKPTISSRPDAGKLLKKNNNSLDDN-QKLLRRRSFDRPPSSLTSPSTSASPRIQK 106
Query: 453 TMS 445
+++
Sbjct: 107 SLN 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,131,187
Number of Sequences: 28952
Number of extensions: 436424
Number of successful extensions: 1536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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