Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0950
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59080.1 68416.m06586 aspartyl protease family protein contai...    28   4.6  

>At3g59080.1 68416.m06586 aspartyl protease family protein contains
           similarity to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 535

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 177 CCVEVNSDTHTSQRRHFKYGK-YL*YEQLNYTTHIASGKQSIM 52
           C V+ NSDT+ S +  F   K  L +  LN+T+ +A GK++++
Sbjct: 332 CLVDRNSDTNVSSKLIFGEDKDLLSHPNLNFTSFVA-GKENLV 373


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,363,705
Number of Sequences: 28952
Number of extensions: 160822
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)