Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0949
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.2  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   5.6  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   5.6  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   5.6  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  

>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 20  LLCSVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMD 184
           LL  +  G N    P  K G+ SAS++ + AW++  K  S   R   T  E   D
Sbjct: 496 LLQELISGINQKQKPSHKRGSLSASHKRDAAWSLLYKATSNKSRPTTTSTELKTD 550


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 343  YYNNLIDGLLDKGIEPLVTIFHWD---LPQSLQDLGGWMNPLIVDWFE 477
            YY+   DG +D  I+P +  F +D   + +++++L   ++  +  WF+
Sbjct: 4665 YYDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWFQ 4712


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 480 VLKPVDYQRIHPATKILQTL 421
           VLKPV Y++I    KILQ L
Sbjct: 73  VLKPVKYKKIKREIKILQNL 92


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 189 VRSIIASGLVWTSRSHMLSPLSLTFQAPS-TWYEAD 85
           +  +I++G  W++ S +   ++  F+APS   YEAD
Sbjct: 74  IMGVISTGFAWSAYSLVKKYIAPMFRAPSQNAYEAD 109


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 29  SVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIW 145
           S  +G++L+F        AS+S  +E     SDK  SIW
Sbjct: 298 SSCFGNSLSFAASNGVDGASSSQVLENILVASDKEFSIW 336


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 466 DWFEDYARVVFSLFGIELKPGSL*TSCIDLRLCL*HWR 579
           DW +D+   V S+FG+   P ++  S +D    L  W+
Sbjct: 144 DWQDDFQDAVNSVFGLPETPKTIEESSLDPDRILSLWQ 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,377
Number of Sequences: 5004
Number of extensions: 61587
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)