Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0949
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)        110   9e-25
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   1e-21
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 29   2.6  
SB_50452| Best HMM Match : Nepo_coat_N (HMM E-Value=7.2)               29   3.4  
SB_12199| Best HMM Match : FF (HMM E-Value=4.6)                        28   6.0  
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score =  110 bits (265), Expect = 9e-25
 Identities = 43/85 (50%), Positives = 63/85 (74%)
 Frame = +1

Query: 256 GLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLLDKGIEPLVTIFHWDLPQSLQD 435
           G+  YRFS+SW R++P G  + +++ G +YYN +ID LL   I+P+ T++H+DLPQ+LQD
Sbjct: 81  GVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHFDLPQALQD 140

Query: 436 LGGWMNPLIVDWFEDYARVVFSLFG 510
            GGW+N  +++WF  YARV F LFG
Sbjct: 141 KGGWLNSRVIEWFAGYARVCFKLFG 165



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/67 (44%), Positives = 41/67 (61%)
 Frame = +2

Query: 56  FPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMDLTNGDVTCDSYHLWERD 235
           FP  F +G A+A++Q+EGAWN   KG +IWD   H K   I +  N D+ CDSYH  + D
Sbjct: 15  FPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSH-KTGNIHNNENADIACDSYHKTDED 73

Query: 236 IEMATEL 256
           I++   L
Sbjct: 74  IQLLKSL 80


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  100 bits (239), Expect = 1e-21
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = +1

Query: 256 GLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLLDKGIEPLVTIFHWDLPQSLQD 435
           G+  YRFS+SWPR++P G    I+  G +YYNNLI+ LL   I+P+ TI+HWDLP   + 
Sbjct: 104 GVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPVATIYHWDLPVPFRM 163

Query: 436 LGGWMNPLIVDWFEDYARVVFSLFGIELKPG-SL*TSCIDLRLCL*HW 576
            G W N  I++ F DYA + F  FG  +K   ++    I+L     HW
Sbjct: 164 AGSWTNSSIIEHFNDYAEICFKNFGDRVKKWITINEPAIELLFMKTHW 211



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
 Frame = +2

Query: 53  TFPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKP-EAIMDLTNGDVTCDSYHLWE 229
           TFP  F++G+A+++YQ+EGAW+V  KG  +WD L H+     +     GDV CDSYH ++
Sbjct: 35  TFPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHSHQFSHLFKNQTGDVACDSYHKYK 94

Query: 230 RDIEMATEL 256
            D+++   L
Sbjct: 95  EDVQLLRNL 103


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 170 EAIMDLTNGDVTCDSYHLWERDIEMATELV 259
           EA +DL N  V  +   LWER  E+ TE++
Sbjct: 174 EASIDLQNISVELEGRELWERFSELGTEMI 203


>SB_50452| Best HMM Match : Nepo_coat_N (HMM E-Value=7.2)
          Length = 113

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 489 PSVVLKPVDYQRIHPATKILQTLG*IPMKNGNKRFNPLI 373
           PS++  P D+  +H    I+ TL    +K GN +FNP I
Sbjct: 16  PSLIA-PFDWSMVHVLLLIIVTLPLAVLKAGNVKFNPPI 53


>SB_12199| Best HMM Match : FF (HMM E-Value=4.6)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 340 KYYNNLIDGLLDKGIEPLVTIFHWDLPQSLQDL 438
           K+  NL DG+L K ++  +  F +D  QSL++L
Sbjct: 37  KFVQNLHDGVLQKHVQSKLLNFGFDKEQSLKNL 69


>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +2

Query: 71  KFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIM---DLTNGDVTCD 211
           ++G  S+     G W  + K   +W    HT  EA M    L NG   CD
Sbjct: 335 RWGRDSSGAAFVGLWGHASKPNQVWRMYDHTMYEAYMYHWILNNGLYNCD 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,076,729
Number of Sequences: 59808
Number of extensions: 475004
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)