Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0948
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 40 3e-04
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 29 0.63
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 29 0.63
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.9
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 27 2.6
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 27 2.6
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 27 3.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 4.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 7.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 7.8
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 7.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 541 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKC 678
S P + CYKC R GH AR+C G S G +R C+ C
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYAC 121
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 15/55 (27%)
Frame = +1
Query: 565 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNR 684
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGR 90
Score = 34.3 bits (75), Expect = 0.017
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKC 669
CY C GH ARECT+G + + + +C
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASEC 51
Score = 33.5 bits (73), Expect = 0.029
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 505 RCY-ISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECT 615
+CY + + F A +CYKCN+ GH A CT
Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCT 173
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Frame = +1
Query: 559 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNR 684
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQ 164
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 41 TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 196
+NR +A R S GCD N T PD +Y + + TD +L F
Sbjct: 400 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 450
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 41 TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 196
+NR +A R S GCD N T PD +Y + + TD +L F
Sbjct: 320 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 370
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 565 SVCYKCNRTGHFAREC 612
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 565 SVCYKCNRTGHFAREC 612
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 303 NVVF*YLFFYILIMVVNLCCIYFIHTL 383
+V+F FF+ L CC+YF HTL
Sbjct: 33 SVIFINFFFFYLCR----CCVYFYHTL 55
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 341 YQNIKKQVLKDHIPFVTFEFNMNSKNINYSIN*DITMNIMELF 213
Y N ++ ++ IP FN N +NIN DIT + E F
Sbjct: 337 YLNFNAKLYEECIPPSILYFNKNDENINVGNIEDITNYMYETF 379
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 495 DRRTMLH*CLKCSRIFKTDRNEFKRLLQVQPDRAFRARMHAG 620
D +T+LH C KC +F RN +L + +R R + G
Sbjct: 44 DPKTLLHGCSKCGSLFIFGRN--IKLRTISSERKARTDLKKG 83
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 74 ARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLFSTVTNE 214
ARL++E G D PE + + + T + + + F+ VTN+
Sbjct: 111 ARLKAERNGEDFPEEQFDSNCITPGTTFMERVSRQLYYFIHKKVTND 157
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 7.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 568 VCYKCNRTGHFAREC 612
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 507 MLH*CLKCSRIFKTDRN 557
+LH C+ C IF DRN
Sbjct: 424 LLHWCINCRSIFSGDRN 440
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 505 RCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQ 618
RC S SK + + C+ C+ GH + +C Q
Sbjct: 104 RCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,670
Number of Sequences: 5004
Number of extensions: 49413
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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