Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0948
(689 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 48 4e-05
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 41 0.004
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 41 0.004
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 41 0.004
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 41 0.004
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 41 0.004
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 41 0.004
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 41 0.004
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 41 0.004
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 41 0.004
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 41 0.004
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 34 0.42
U79569-1|AAD00321.1| 269|Homo sapiens no arches protein. 34 0.55
EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and polyadenyl... 34 0.55
CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein. 34 0.55
BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein. 34 0.55
BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and polyadenyl... 34 0.55
AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein pr... 33 1.3
AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens ... 33 1.3
AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein. 33 1.3
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 32 1.7
AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein. 32 1.7
U89505-1|AAC51293.1| 366|Homo sapiens Hlark protein. 31 3.9
BC032735-1|AAH32735.1| 364|Homo sapiens RNA binding motif prote... 31 3.9
BC000307-1|AAH00307.1| 364|Homo sapiens RNA binding motif prote... 31 3.9
BC004951-1|AAH04951.1| 359|Homo sapiens RNA binding motif prote... 31 5.1
BC003503-1|AAH03503.1| 359|Homo sapiens RNA binding motif prote... 31 5.1
AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens ... 30 6.8
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 47.6 bits (108), Expect = 4e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGGVVSRD------SGFNRQREKCFKCNRT 687
MSS+ C+KC R+GH+AREC GG R GF R+ C++C +
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGES 50
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 148 CYRCGESGHLARECT 162
Score = 31.1 bits (67), Expect = 3.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 12/51 (23%)
Frame = +1
Query: 568 VCYKCNRTGHFARECT----------QGGVVSRD-SGFNRQREK-CFKCNR 684
+CY+C +GH A++C +GG +++D R+RE+ C+ C +
Sbjct: 43 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK 93
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 74 AKDCKEPKREREQCCYNCGKPGHLARDC 101
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.1 bits (67), Expect = 3.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 KFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQ 657
+F+ + + CY S +K + CY C R GH A++C + R+
Sbjct: 44 QFVSSSLPDICYRCGESGH-LAKDCDLQEDACYNCGRGGHIAKDCKEP---------KRE 93
Query: 658 REK-CFKCNR 684
RE+ C+ C +
Sbjct: 94 REQCCYNCGK 103
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDC 111
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.1 bits (67), Expect = 3.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 KFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQ 657
+F+ + + CY S +K + CY C R GH A++C + R+
Sbjct: 44 QFVSSSLPDICYRCGESGH-LAKDCDLQEDACYNCGRGGHIAKDCKEP---------KRE 93
Query: 658 REK-CFKCNR 684
RE+ C+ C +
Sbjct: 94 REQCCYNCGK 103
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDC 111
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 153 CYRCGESGHLARECT 167
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 79 AKDCKEPKREREQCCYNCGKPGHLARDC 106
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 152 CYRCGESGHLARECT 166
Score = 30.3 bits (65), Expect = 6.8
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Frame = +1
Query: 568 VCYKCNRTGHFARECT-----------QGGVVSRD-SGFNRQREK-CFKCNR 684
+CY+C +GH A++C +GG +++D R+RE+ C+ C +
Sbjct: 46 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGK 97
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 78 AKDCKEPKREREQCCYNCGKPGHLARDC 105
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 159 CYRCGESGHLARECT 173
Score = 30.3 bits (65), Expect = 6.8
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Frame = +1
Query: 568 VCYKCNRTGHFARECT-----------QGGVVSRD-SGFNRQREK-CFKCNR 684
+CY+C +GH A++C +GG +++D R+RE+ C+ C +
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGK 104
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 85 AKDCKEPKREREQCCYNCGKPGHLARDC 112
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 159 CYRCGESGHLARECT 173
Score = 30.3 bits (65), Expect = 6.8
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Frame = +1
Query: 568 VCYKCNRTGHFARECT-----------QGGVVSRD-SGFNRQREK-CFKCNR 684
+CY+C +GH A++C +GG +++D R+RE+ C+ C +
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGK 104
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 85 AKDCKEPKREREQCCYNCGKPGHLARDC 112
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.1 bits (67), Expect = 3.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 KFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQ 657
+F+ + + CY S +K + CY C R GH A++C + R+
Sbjct: 44 QFVSSSLPDICYRCGESGH-LAKDCDLQEDACYNCGRGGHIAKDCKEP---------KRE 93
Query: 658 REK-CFKCNR 684
RE+ C+ C +
Sbjct: 94 REQCCYNCGK 103
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDC 111
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 151 CYRCGESGHLARECT 165
Score = 31.1 bits (67), Expect = 3.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 KFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQ 657
+F+ + + CY S +K + CY C R GH A++C + R+
Sbjct: 37 QFVSSSLPDICYRCGESGH-LAKDCDLQEDACYNCGRGGHIAKDCKEP---------KRE 86
Query: 658 REK-CFKCNR 684
RE+ C+ C +
Sbjct: 87 REQCCYNCGK 96
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 77 AKDCKEPKREREQCCYNCGKPGHLARDC 104
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 151 CYRCGESGHLARECT 165
Score = 31.1 bits (67), Expect = 3.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 KFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQ 657
+F+ + + CY S +K + CY C R GH A++C + R+
Sbjct: 37 QFVSSSLPDICYRCGESGH-LAKDCDLQEDACYNCGRGGHIAKDCKEP---------KRE 86
Query: 658 REK-CFKCNR 684
RE+ C+ C +
Sbjct: 87 REQCCYNCGK 96
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 77 AKDCKEPKREREQCCYNCGKPGHLARDC 104
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGG 624
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.1 bits (67), Expect = 3.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 KFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQ 657
+F+ + + CY S +K + CY C R GH A++C + R+
Sbjct: 44 QFVSSSLPDICYRCGESGH-LAKDCDLQEDACYNCGRGGHIAKDCKEP---------KRE 93
Query: 658 REK-CFKCNR 684
RE+ C+ C +
Sbjct: 94 REQCCYNCGK 103
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 529 AQEFSKPIAMSSSVCYKCNRTGHFAREC 612
A++ +P CY C + GH AR+C
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDC 111
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 34.3 bits (75), Expect = 0.42
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 508 CYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNR 684
CY S + +K + ++CY C R+GH A++C +D R R+ C+ C R
Sbjct: 47 CYCCGESGRN-AKNCVLLGNICYNCGRSGHIAKDC-------KDPKRER-RQHCYTCGR 96
Score = 33.9 bits (74), Expect = 0.55
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKC 669
MSS + C +GH+AR C +GG R G + + +C
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQC 38
Score = 30.3 bits (65), Expect = 6.8
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 475 CKFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNR 654
C +G I C S A++ P CY C R GH AR+C +R
Sbjct: 60 CVLLG-NICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC------------DR 106
Query: 655 QRE-KCFKCNR 684
Q+E KC+ C +
Sbjct: 107 QKEQKCYSCGK 117
>U79569-1|AAD00321.1| 269|Homo sapiens no arches protein.
Length = 269
Score = 33.9 bits (74), Expect = 0.55
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 547 PIAMSSSVCYKCNRTGHFARECTQG 621
P + CYKC GH+A CT+G
Sbjct: 237 PRPLEQVTCYKCGEKGHYANRCTKG 261
>EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 269
Score = 33.9 bits (74), Expect = 0.55
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 547 PIAMSSSVCYKCNRTGHFARECTQG 621
P + CYKC GH+A CT+G
Sbjct: 237 PRPLEQVTCYKCGEKGHYANRCTKG 261
>CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein.
Length = 269
Score = 33.9 bits (74), Expect = 0.55
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 547 PIAMSSSVCYKCNRTGHFARECTQG 621
P + CYKC GH+A CT+G
Sbjct: 237 PRPLEQVTCYKCGEKGHYANRCTKG 261
>BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein.
Length = 243
Score = 33.9 bits (74), Expect = 0.55
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 547 PIAMSSSVCYKCNRTGHFARECTQG 621
P + CYKC GH+A CT+G
Sbjct: 211 PRPLEQVTCYKCGEKGHYANRCTKG 235
>BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 244
Score = 33.9 bits (74), Expect = 0.55
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 547 PIAMSSSVCYKCNRTGHFARECTQG 621
P + CYKC GH+A CT+G
Sbjct: 212 PRPLEQVTCYKCGEKGHYANRCTKG 236
>AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein
protein.
Length = 899
Score = 32.7 bits (71), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 517 SVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR 660
+V++ S P + CY C +GH+A++C Q + + G R R
Sbjct: 836 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLR 883
>AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens
cDNA FLJ20281 fis, clone HEP03769. ).
Length = 298
Score = 32.7 bits (71), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 517 SVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR 660
+V++ S P + CY C +GH+A++C Q + + G R R
Sbjct: 235 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLR 282
>AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein.
Length = 855
Score = 32.7 bits (71), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 517 SVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR 660
+V++ S P + CY C +GH+A++C Q + + G R R
Sbjct: 792 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLR 839
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 32.3 bits (70), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 571 CYKCNRTGHFARECT 615
CY+C +GH ARECT
Sbjct: 35 CYRCGESGHLARECT 49
>AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein.
Length = 622
Score = 32.3 bits (70), Expect = 1.7
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +1
Query: 472 ICKFIG*LIVERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFN 651
IC+ + + + +V ++F + M +C++C R GH REC G
Sbjct: 477 ICRDVMDDVASGSHAAVAVTRQFRQN--MRGRICFRCGREGHLMRECRAKFPARDRQGIE 534
Query: 652 RQREK--CFKCNR 684
R C +C R
Sbjct: 535 NSRRPGLCPRCRR 547
>U89505-1|AAC51293.1| 366|Homo sapiens Hlark protein.
Length = 366
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 502 ERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFAREC---TQGGVVSRDSGFNRQ 657
+R ++ + +++ + P S CY+C + GH+++EC G V +N Q
Sbjct: 139 KRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQ 193
>BC032735-1|AAH32735.1| 364|Homo sapiens RNA binding motif protein
4 protein.
Length = 364
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 502 ERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFAREC---TQGGVVSRDSGFNRQ 657
+R ++ + +++ + P S CY+C + GH+++EC G V +N Q
Sbjct: 139 KRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQ 193
>BC000307-1|AAH00307.1| 364|Homo sapiens RNA binding motif protein
4 protein.
Length = 364
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 502 ERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFAREC---TQGGVVSRDSGFNRQ 657
+R ++ + +++ + P S CY+C + GH+++EC G V +N Q
Sbjct: 139 KRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQ 193
>BC004951-1|AAH04951.1| 359|Homo sapiens RNA binding motif protein
4B protein.
Length = 359
Score = 30.7 bits (66), Expect = 5.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 502 ERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFAREC 612
+R ++ + +++ + P S CY+C + GH+++EC
Sbjct: 139 KRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
>BC003503-1|AAH03503.1| 359|Homo sapiens RNA binding motif protein
4B protein.
Length = 359
Score = 30.7 bits (66), Expect = 5.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 502 ERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFAREC 612
+R ++ + +++ + P S CY+C + GH+++EC
Sbjct: 139 KRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKEC 175
>AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens
cDNA FLJ34176 fis, clone FCBBF3016178. ).
Length = 212
Score = 30.3 bits (65), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQ 618
CY C + GHF +EC Q
Sbjct: 137 CYNCEKPGHFKKECRQ 152
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,648,411
Number of Sequences: 237096
Number of extensions: 1540422
Number of successful extensions: 3519
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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