Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0948
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical ...    41   0.001
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AC006672-5|AAM98003.1|   42|Caenorhabditis elegans Hypothetical ...    32   0.44 
U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase pr...    31   0.59 
L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase pr...    31   0.59 
AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line hel...    31   0.59 
Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        27   9.6  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    27   9.6  
AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line he...    27   9.6  

>AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical
           protein K08D12.3a protein.
          Length = 151

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 565 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 678
           S CY C  TGHF+R+C +GG      G       C+ C
Sbjct: 35  STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNC 72



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRT 687
           CY C R+GH +RECT+ G        + + ++C++C  T
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQET 139



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 556 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRT 687
           MS   CYKC + GH +R C  G       G       C+ C  T
Sbjct: 1   MSDRNCYKCQQPGHISRNCPNGESDGGRRG-GGGGSTCYNCQET 43



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = +1

Query: 571 CYKCNRTGHFARECT-------QGGVVSR-DSGFNRQREKCFKCNRT 687
           CY C   GH++R+C         GG   R   G +   +KC+ C R+
Sbjct: 69  CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRS 115



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 571 CYKCNRTGHFAREC 612
           CY+C  TGH +R+C
Sbjct: 133 CYQCQETGHISRDC 146


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 556 MSSSVCYKCNRTGHFARECTQGGV 627
           +S   CYKC   GH+A  C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270


>AC006672-5|AAM98003.1|   42|Caenorhabditis elegans Hypothetical
           protein K08D12.3b protein.
          Length = 42

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 556 MSSSVCYKCNRTGHFARECTQG 621
           MS   CYKC + GH +R C  G
Sbjct: 1   MSDRNCYKCQQPGHISRNCPNG 22


>U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200


>L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200


>AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line
           helicase protein 1 protein.
          Length = 763

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200


>Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical
           protein T14G8.4 protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 195 FQPSQTK*FHNVHCNVSVYRIVNVF---RIHIKFKCYKWNVVF*YLFFYILIMVVNLCCI 365
           F+   TK  H+   N  + +  + F    IH  FK  K  ++  +L F  LI+ V LCC 
Sbjct: 180 FKKVNTK--HSDFANCIIIKTASFFVSIPIHKIFKILKSQILALWLDF--LIVFVLLCCF 235

Query: 366 YFIHTLCWC 392
           + ++ + WC
Sbjct: 236 FQLNIVMWC 244


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 324 FFYILIMVVNLCCIYFIHTLCWCEIK 401
           F  I   ++NL C+ F  TL WC IK
Sbjct: 8   FSQIAFTLINLFCVIFDTTLLWCVIK 33


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +1

Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 678
           C+ C   GH AR C +     +  G+  Q      C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611


>AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical
           protein K02F6.1 protein.
          Length = 783

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 571 CYKCNRTGHFARECTQGGVVSRDSGF-NRQRE 663
           CYKC   GH +++C Q    S +SG  NR+ E
Sbjct: 313 CYKCKVVGHVSKDCPQS---STNSGVTNRKTE 341


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 85  PQTCVAYSDYSMTVCSSFTKNSITSSTV 2
           P TC +Y   S T C+ + +N   +ST+
Sbjct: 228 PATCTSYMPDSTTKCAEYARNGFCTSTM 255


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
            K10D2.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 571  CYKCNRTGHFARECTQ 618
            C++C+R GHF   C Q
Sbjct: 1357 CHQCHRIGHFVESCPQ 1372


>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
           protein.
          Length = 974

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413


>AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line
           helicase protein 2 protein.
          Length = 974

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 568 VCYKCNRTGHFARECTQ 618
           VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,327,015
Number of Sequences: 27780
Number of extensions: 282802
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)