Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0948
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   8.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 282 KFKCYKWNVVF*YLFFYILIMVVNLCCIYFI 374
           ++ C K +++F   F Y LI +   CC+  I
Sbjct: 227 EYSCLKVDLLFKREFSYYLIQIYIPCCMLVI 257


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 282 KFKCYKWNVVF*YLFFYILIMVVNLCCIYFI 374
           ++ C K +++F   F Y LI +   CC+  I
Sbjct: 227 EYSCLKVDLLFKREFSYYLIQIYIPCCMLVI 257


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 399  LFHTSIA-YV*NKYNINLQPLSEYKKT 322
            LFH S+  +V N   +NL+PLS  K T
Sbjct: 1033 LFHYSVVPFVSNHDILNLRPLSMEKGT 1059


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 535 EFSKPIAMSSSVCYKCNRTGHFAR 606
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/34 (20%), Positives = 21/34 (61%)
 Frame = -1

Query: 353 IYNHYQNIKKQVLKDHIPFVTFEFNMNSKNINYS 252
           +YN   N++ + ++ ++  +  +FN+  +N N++
Sbjct: 47  VYNGNVNVEDENVQSYVECMMKKFNVVDENGNFN 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,347
Number of Sequences: 438
Number of extensions: 3207
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)