Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0948
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 43 2e-04
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 39 0.004
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 39 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.008
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 38 0.008
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 37 0.011
At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein ... 36 0.033
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.033
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.077
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.24
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 32 0.41
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.54
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.54
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.95
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 31 0.95
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.3
At4g17410.1 68417.m02607 expressed protein 30 1.3
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ... 30 1.3
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 30 1.7
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 30 1.7
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 29 2.2
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 2.2
At5g64560.1 68418.m08113 magnesium transporter CorA-like family ... 29 2.9
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 2.9
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 2.9
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 2.9
At5g47430.1 68418.m05844 expressed protein 29 3.8
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.8
At4g28580.1 68417.m04088 magnesium transporter CorA-like family ... 28 5.1
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 5.1
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 28 6.7
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 27 8.9
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 562 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCN 681
+S CY+C GHFAREC +S G + C++CN
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCN 362
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 559 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 684
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 678
CY C TGHFAR+CT G + + C+ C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTC 169
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNR 684
CY+C +GH AR+C Q R SG C+KC +
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGK 287
Score = 35.1 bits (77), Expect = 0.044
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 559 SSSVCYKCNRTGHFARECT 615
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 34.3 bits (75), Expect = 0.077
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 565 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRT 687
S CY C GH +++C GG +R E C+ C T
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDT 140
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 678
CY C GHFAR+CTQ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSC 235
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKC 678
CY C GH AR+CTQ V + D + C+ C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 562 SSVCYKCNRTGHFAREC 612
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNR 684
CY+C TGH AR+C + G S SG KCF C +
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGK 289
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 678
CY C GHFAR+C Q G + G R C+ C
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSC 166
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGG 624
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 562 SSVCYKCNRTGHFARECT 615
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 565 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRT 687
S CY C GH A+ CT + S G R C++C T
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGT 260
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSG 645
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 559 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKC 678
S C+ C GH A++C G G S G R+ +C+ C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMC 135
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 660
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 660
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 660
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGG 624
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 565 SVCYKCNRTGHFARECTQGG 624
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGG 624
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGG 624
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 553 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNR 684
A + + CYKC + GH+AR+CT V D+G + CFKC +
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGK 275
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 526 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 663
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 559 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNR 684
SS CYKC + GH++R+CT Q SG + C+KC +
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGK 347
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +1
Query: 526 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNR 684
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGK 311
>At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 476
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 318 YLFFYILIMVVNLCCIYFIHTLCWCEIKCLMD 413
Y F+++ ++ L CIY +H CW +K +MD
Sbjct: 200 YRFYFMFVLCSTLLCIY-VHVFCWIYVKRIMD 230
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 571 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 660
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.077
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVSRDSG 645
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGG 624
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 571 CYKCNRTGHFAREC 612
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.54
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGG 624
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.54
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGG 624
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.95
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 568 VCYKCNRTGHFAREC 612
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 502 ERCYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 630
E +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 174 EEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 541 SKPIAMSSSVCYKCNRTGHFAREC 612
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 568 VCYKCNRTGHFARECTQGG 624
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 443
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 318 YLFFYILIMVVNLCCIYFIHTLCWCEIKCLMD 413
Y FF++ + L CIY + CW I+ +M+
Sbjct: 191 YRFFFMFVFSTTLLCIY-VFAFCWVYIRKIME 221
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQGGVVS 633
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 565 SVCYKCNRTGHFARECTQGGV 627
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 559 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 675
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 562 SSVCYKCNRTGHFARECTQG 621
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 562 SSVCYKCNRTGHFARECTQG 621
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
>At5g64560.1 68418.m08113 magnesium transporter CorA-like family
protein (MRS2-2) weak similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 394
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 240 VSVYRIV-NVFRIHIKFKCYKWNVVF*YLFFYILIMVVNLCCIYFIHTLCWCEIKCLM 410
+S+Y +V +F ++I Y WN Y+F Y++ + LC + F+ + + K L+
Sbjct: 338 LSMYSLVAGIFGMNIP---YTWNDGHGYMFKYVVGLTGTLCVVVFVIIMSYARYKGLV 392
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQG 621
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQG 621
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQG 621
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 568 VCYKCNRTGHFARECTQGG 624
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 556 MSSSVCYKCNRTGHFAREC 612
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At4g28580.1 68417.m04088 magnesium transporter CorA-like family
protein (MRS2-6) weak similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 408
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 255 IVNVFRIHIKFKCYKWNVVF*YLFFYILIMVVNLCCIYFIHTLCWCEIKCLMD 413
+VN+F ++I Y +F Y++ VV LC + FI T+ + + K L+D
Sbjct: 360 VVNLFGMNIPIGLYSTPDIF----GYVVWAVVALCIVLFIVTVGYAKWKKLLD 408
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 529 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 639
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 571 CYKCNRTGHFAREC 612
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 571 CYKCNRTGHFARECTQG 621
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,020,270
Number of Sequences: 28952
Number of extensions: 243148
Number of successful extensions: 654
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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