Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0946
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   2.9  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   6.6  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    25   8.8  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 327 ATGLMLQRNKWLTRAIVSGTGGA 395
           ATG MLQR++WL+ A    T GA
Sbjct: 466 ATGGMLQRDQWLSEAEKCETEGA 488


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 711 RPLLIFLCIFISVLVLESRPLLIFLYYRFIGVLFPAAAHRCQHRRRSQPNLILNAM 544
           R +  +L     +L L + P++  +   FIG+  PA++H  Q  + S  N   NA+
Sbjct: 62  RQIYTYLVTHKVILTLIAVPVVFAISIPFIGMQTPASSHGKQTTQVSTGNWSKNAV 117


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 329 HRADAAAKQVAYKGDCQRYWRCVGGVPQAMYCTDGLFFNELTQQCD 466
           +  DA A++    G        V G   A   TDG +FN+ +QQ D
Sbjct: 36  YTCDADARRAFISGFDGSAGCAVIGETSAALFTDGRYFNQASQQLD 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,265
Number of Sequences: 5004
Number of extensions: 60008
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)