Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0946
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0108 + 1337009-1338190                                           33   0.32 
02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399...    30   2.3  
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407...    29   5.2  
04_03_0095 + 11114971-11115939,11115954-11116556                       28   6.9  
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     28   9.2  

>10_01_0108 + 1337009-1338190
          Length = 393

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 337 SPVAVQLVVEEPQITWRQSASLCLLSLLEDIYRSVF 230
           S +A  L  + P I W Q A+ C+ S+LEDI    F
Sbjct: 178 SLMATMLTAKRPSIFWTQCAARCIDSMLEDIENITF 213


>02_05_0378 -
           28438918-28439064,28439280-28439313,28439859-28439963,
           28440402-28441558
          Length = 480

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 457 LRQLVEEESIRTVHGLRHAAHAPPVPLTIALVSH--LFRCSISPVAVQLVVEEPQ 299
           L +  E ES+R +    HA H P +   +   S+  L RC+I+ V V +V  EP+
Sbjct: 165 LGEFREGESLRLLPKCSHAFHVPCIDTWLKSHSNCPLCRCNIAFVTVGMVSPEPE 219


>08_01_0462 +
           4072369-4072630,4072732-4072814,4072937-4073020,
           4073509-4073584,4073712-4073784,4073878-4073951,
           4074158-4074251,4074374-4074443
          Length = 271

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 350 KQVAYKGDCQRYWRCVGGVPQAMYCTDGLFFNEL 451
           K + Y+GD + +WR V  V +A  CT+  +F E+
Sbjct: 110 KTLRYQGDGRPFWRIV--VAEATECTNNDYFEEV 141


>04_03_0095 + 11114971-11115939,11115954-11116556
          Length = 523

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 1   PASTTLP*LLEVLHVRSRGRSGIQLQRRLDIRFRVADMQLEMGYELYPSC 150
           P S  LP LLE + +   G SG  +QR +    R+ D+++E    L   C
Sbjct: 220 PESINLP-LLETMRLTGPGNSGRDIQRLISGCPRLTDLKIEGAPNLRTLC 268


>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = +2

Query: 17  FRDCSKFYMCA-HGEEVEFNCNGGLIFDFELQTCNWKWATNCTLRVVKEDID 169
           F  C K  + A HG  + +N  G        Q C WK      + V KE  D
Sbjct: 645 FASCDKLGIAAEHGYFIRWNKEGEWETSSSAQDCEWKNIAEPIMEVYKETTD 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,454,672
Number of Sequences: 37544
Number of extensions: 430227
Number of successful extensions: 1092
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)