Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0946
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15) 46 4e-05
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 37 0.020
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 33 0.25
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 33 0.33
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 32 0.43
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18) 30 1.8
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.4
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29) 28 9.4
>SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)
Length = 134
Score = 45.6 bits (103), Expect = 4e-05
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 8 LPHFRDCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
LP C +Y C G+ V +C G ++D + CNW WA C
Sbjct: 31 LPDSTSCQHYYHCTWGKAVRKDCGPGRVWDPRITNCNWDWAYKC 74
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 371 DCQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANVKC 487
DC Y++C G +C DGL FN L + CD + V C
Sbjct: 241 DCSAYYQCKKGRSFKKFCPDGLKFNALIKSCDEPSKVNC 279
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 20 RDCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNCTLRVVKED 163
+DCS +Y C G + C GL F+ +++C+ NC + E+
Sbjct: 240 KDCSAYYQCKKGRSFKKFCPDGLKFNALIKSCDEPSKVNCVTKQRDEE 287
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 359 AYKGDCQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANVKCGVIPDEE 508
A K +C + C GG+ C GL FN CD+ VKC PD +
Sbjct: 467 AEKENCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEVKCN--PDND 514
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 23 DCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
+C F +C G + C GLIF+ +L C+W C
Sbjct: 471 NCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEVKC 509
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 371 DCQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANVKC 487
+C Y C GG C GL FN +T++CD NVKC
Sbjct: 684 NCLGYIVCRGGNIYFRNCRRGLRFNGVTKRCDLPRNVKC 722
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 374 CQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANVKCG 490
C+ + C + M C + L FN T+ CD NV+CG
Sbjct: 457 CEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENVQCG 495
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 359 AYKGDCQRYWRCVGGVPQA-MYCTDGLFFNELTQQCDFEANV 481
A +C Y C G A +C GL FNE CD+ +NV
Sbjct: 325 ADSSNCNLYITCSNGFTIANRHCPTGLAFNEAIGMCDYPSNV 366
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 23 DCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNCTLR 148
+C+ F C++G + +C L FD + C W NC R
Sbjct: 610 NCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKVNCKSR 651
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 23 DCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNCTLR 148
+C+ F MC++G +C L +D C W +C R
Sbjct: 531 NCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTVDCGQR 572
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 RDCSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
RDCS+FY C A C+ GL + TC+W +C
Sbjct: 795 RDCSRFYQCDAFHRAFLHRCSPGLKWSITKTTCDWPRNVDC 835
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 RDCSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
RDCSKFY C A C GL + + C+W +C
Sbjct: 900 RDCSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDC 940
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 RDCSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
RDCS+FY C A + C GL + + C+W +C
Sbjct: 1150 RDCSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDWPRYVDC 1190
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 23 DCSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
DCS+FY C A C GL + + TC+W +C
Sbjct: 1006 DCSRFYQCDAFHRAFLHRCPAGLKWSVKKTTCDWPRYVDC 1045
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 RDCSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
RDCS+FY C A C GL + + C+W +C
Sbjct: 1250 RDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDC 1290
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 20 RDCSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNCT 142
+DC++FY C E + C GL++ +TC++ +C+
Sbjct: 580 KDCAQFYFCYGSAESLLSRCPRGLLWSVVKKTCDYPHLVDCS 621
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 374 CQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANVKC 487
C+ + C C GL +NE T+QCD+ NV C
Sbjct: 91 CRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNVDC 128
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 2 LLLP--HFRD---CSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNCTL 145
LLLP H+ D CS+FY C A + +C GL + TC+W +C +
Sbjct: 116 LLLPNGHYHDPRNCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYVDCDI 169
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 11 PHFRDCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
PH C + C++G E C GL ++ E + C+W + C
Sbjct: 95 PHPDFCKMYIACSNGIAYEMPCPAGLNWNDEKKYCDWPFNAPC 137
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 20 RDCSKFYMC-AHGEEVEFNCNGGLIFDFELQTCNWKWATNCTL 145
R+CS+FY C A + +C GL + TC+W +C +
Sbjct: 34 RNCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYVDCDI 76
>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
Length = 878
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +2
Query: 443 NELTQQCDFEANVKCGVIPDEEYKANSLCTKTRFIAFNIRL 565
NEL + + +C VIP+E Y NSL K R NIRL
Sbjct: 120 NELFVTLNVDTGAQCNVIPEEIY--NSLPQKPRLQDANIRL 158
>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1888
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = -2
Query: 708 PLLIFLCIFISVLVLESRPLLIFLYYRFIGVLFPAAA---HRCQHRR----RSQPNLILN 550
P+ + + + V+VL + +L+ Y++ V P +A +R H RSQ NL
Sbjct: 1274 PVTTVIVVCVVVVVLVAMAVLVVCYHKHRMVKRPISAGKWNRISHMHGLFTRSQTNLESF 1333
Query: 549 AMNLVFVHNEFALYSSSG 496
L+F++ E A + G
Sbjct: 1334 GTELIFLNTENASHDEGG 1351
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 95 DFELQTCNWKWATN 136
+FE TCNWK ATN
Sbjct: 2272 NFESDTCNWKQATN 2285
>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
Length = 212
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 494 IPDEEYKANSLCTKTRFIAFNIRLGCDLRRC*H-LCAAAGNK 616
+PD E C KT+F A N R C R+C +C A K
Sbjct: 82 VPDSEASTCMSCMKTKFTAINRRHHC--RKCGAVVCGACSTK 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,113,876
Number of Sequences: 59808
Number of extensions: 481282
Number of successful extensions: 1224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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