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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0946
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    37   0.013
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    37   0.013
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    37   0.013
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    36   0.031
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    33   0.22 
Z32840-2|CAD91625.1|  160|Caenorhabditis elegans Hypothetical pr...    32   0.50 
Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical pr...    32   0.50 
DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin p...    32   0.50 
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    32   0.50 
U41038-2|AAX88827.1|  635|Caenorhabditis elegans Serotonin/octop...    31   1.2  
U41038-1|AAK29709.2|  683|Caenorhabditis elegans Serotonin/octop...    31   1.2  
AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin rec...    31   1.2  
AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin rec...    31   1.2  
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +2

Query: 392 CVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIPD---EEYKANSLCT 532
           C  G+P  M+C DGL F+E  Q CD+E NV +C +      E YKA+   T
Sbjct: 258 CTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDECDLESSGFMENYKASEALT 308



 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCG 490
           G C+ R+  CV G  + M C + L +++  + CD+  NV +CG
Sbjct: 36  GACEPRFLACVSGEARYMDCPEDLVYHKNLEFCDWRHNVFECG 78



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  DCSK-FYMCAHGEEVEFNCNGGLIFDFELQTCNW 121
           +CS  F+ C+ G     NC   L+F+  + +C+W
Sbjct: 189 ECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDW 222



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 20  RDCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKW 127
           R  S F  C +G  +   C  GL+F  + Q C+++W
Sbjct: 250 RCSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEW 285



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 362 YKGDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDF-EANVKC 487
           Y  DC  R   C  G      C   L FNE +  CD+ E ++KC
Sbjct: 318 YALDCTPRVLSCQNGRENIFECPPSLVFNENSLICDYPETSLKC 361


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 368 GDCQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCG 490
           G  Q+Y +C  G      C + L+FNE TQ+C +   V +CG
Sbjct: 703 GCSQKYIQCSNGAAIVRRCGESLYFNEATQECTYRDEVPECG 744



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 356  VAYKGDCQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV 481
            +A   +C+ ++RCV G    M C  G  FN L   CD+ + V
Sbjct: 1252 IADANNCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAV 1293



 Score = 34.7 bits (76), Expect = 0.071
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 23   DCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNW 121
            +C  FY C  G +V   C  G +F+  L  C+W
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDW 1289



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 371  DCQRYWRCVGG-VPQAMYCTDGLFFNELTQQCDFEANV 481
            DC    +C GG + +   C   L FN+LT +CD+   V
Sbjct: 1195 DCSAILQCFGGELFEHPSCQSSLAFNQLTGKCDYPQKV 1232



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 338 DAAAKQVA-YKGDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQC 463
           D  +KQ   Y   C  ++  CV G      C D L FNE TQ C
Sbjct: 98  DCTSKQDGIYSIGCSNQFISCVAGGAYMAKCPDSLVFNERTQDC 141



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 368 GDCQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KC 487
           G  Q+Y +C         C   L+F+E +Q C F   V KC
Sbjct: 796 GCSQKYIQCSDSAASVRECEGSLYFDERSQSCRFRDEVFKC 836



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +2

Query: 299 LRFFNHELNCHRADAAAKQVAY-KGD-----CQR-YWRCVGGVPQAMYCTDGLFFNE 448
           L FF++ +    + AA +  AY  G+     C R Y  CV GV QA  C+D   F E
Sbjct: 13  LTFFSNSIQYPHSPAATECPAYFNGNIAGNACSREYSICVNGVRQAATCSDDSVFYE 69


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 368 GDCQR-YWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIPDEE 508
           G C   +  C  G    M+C  GL F+E T +CD+E+NV +C     EE
Sbjct: 318 GQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQETSGEE 366



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV 481
           G+C+ ++  C GG+ + M C   L +NE    CD+  NV
Sbjct: 35  GECEPQFLTCSGGIARIMDCPADLIYNEPLLICDWRHNV 73



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIP 499
           G C   +  C GG+ + M C   L FN     CD+  +V +C  +P
Sbjct: 258 GVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLP 303


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 368 GDCQR-YWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIPDEE 508
           G C   +  C  G    M+C  GL F+E T +CD+E+NV +C     EE
Sbjct: 318 GQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQETSGEE 366



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV 481
           G+C+ ++  C GG+ + M C   L +NE    CD+  NV
Sbjct: 35  GECEPQFLTCSGGIARIMDCPADLIYNEPLLICDWRHNV 73



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIP 499
           G C   +  C GG+ + M C   L FN     CD+  +V +C  +P
Sbjct: 258 GVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLP 303


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 371 DCQRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANVKC 487
           DC ++ RCV G+     C +GL F+  T  CD     KC
Sbjct: 577 DCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKC 615



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 23  DCSKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
           DC KF  C +G    F C  GL F  +   C+    + C
Sbjct: 577 DCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKC 615


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
            protein C39D10.7 protein.
          Length = 1185

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 8    LPHFRDCSKFYM-CAHGEEVEFNCNGGLIFDFELQTCNWKWATN 136
            L H + CS  Y+ C +G      C   L+++ + QTCN+K +TN
Sbjct: 1031 LHHLKMCSPHYIVCDNGRAFSGTCIAPLVYNGDTQTCNYK-STN 1073



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 4/156 (2%)
 Frame = +2

Query: 29   SKFYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNCTLRVVKEDIDXXXXXXXXXXXXX 208
            S FY+CA+G+ V   C   LIF+  +  C++  +TN       +                
Sbjct: 589  SVFYICANGQVVATTCPANLIFNPYVGECDY--STNVRDCQGYQPTTTPSYSYPKTTSKP 646

Query: 209  XXFGEEVEN-GPIDILKQTQQAQ*GRLSPSNLRFFNHELNCHRADAAAKQVA--YKGDCQ 379
                   +   PI+    T     G         F   L+   A   AK+    Y  DC+
Sbjct: 647  YEQPSTTQGYAPIEYTPVTP----GYAPQYTSTIFTTTLSPKYAAMCAKRDDGNYGFDCE 702

Query: 380  RYW-RCVGGVPQAMYCTDGLFFNELTQQCDFEANVK 484
            +Y  +C         C  GL+++ L  +CD + NV+
Sbjct: 703  KYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVE 738



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 368 GDCQRYWRCVGGVPQAMYCTDGLFFNELTQQCD 466
           G   +Y +CV  V     C +GL+F+ L  +C+
Sbjct: 53  GCSSKYLQCVNNVEYEQSCPEGLYFDRLLARCE 85



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 383 YWRCVGGVPQAMYCTDGLFFNELTQQCDFEANVKCGVI-PDEEYKANSLCTKT 538
           ++ C  G   A  C   L FN+ T  CDF  N +   + P + YK     T T
Sbjct: 450 FFTCHDGRAFANDCPGDLVFNKATGTCDFAENCEKNYMEPSQIYKGEDTPTTT 502



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 362 YKGDCQRYW-RCVGGVPQAMYCTDGLFFNELTQQCDFEANVK 484
           Y  DC+ Y+  C         C  GLF+++L  +CD++ +V+
Sbjct: 796 YGLDCEDYYISCNNFETTINRCPAGLFYSKLNNRCDYKEHVE 837



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 26  CSK-FYMCAHGEEVEFNCNGGLIFDFELQTCNWKWATNC 139
           C+K F+ C  G     +C G L+F+    TC+  +A NC
Sbjct: 446 CTKSFFTCHDGRAFANDCPGDLVFNKATGTCD--FAENC 482



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 377  QRYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV 481
            Q Y +C+ G      C  GLF+NE    C ++  V
Sbjct: 904  QDYVQCMQGRSLISSCAPGLFYNEKNGMCAYKHTV 938


>Z32840-2|CAD91625.1|  160|Caenorhabditis elegans Hypothetical
           protein C07G2.1b protein.
          Length = 160

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIPDE 505
           G C  ++  C GG+ + M C   L ++     C++  NV +CG +P +
Sbjct: 72  GGCSPQFLTCSGGISRIMDCPADLIYDPRIVACEYSYNVPQCGGVPQD 119


>Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical
           protein C07G2.1a protein.
          Length = 584

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIPDE 505
           G C  ++  C GG+ + M C   L ++     C++  NV +CG +P +
Sbjct: 72  GGCSPQFLTCSGGISRIMDCPADLIYDPRIVACEYSYNVPQCGGVPQD 119



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 26  CSKFYM-CAHGEEVEFNCNGGLIFDFELQTC 115
           CS+ Y  C +G+E  F C  GL F  E   C
Sbjct: 537 CSQHYKNCVNGQEAIFICENGLFFSPEQARC 567


>DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin
           proteoglycan-1 protein.
          Length = 584

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 368 GDCQ-RYWRCVGGVPQAMYCTDGLFFNELTQQCDFEANV-KCGVIPDE 505
           G C  ++  C GG+ + M C   L ++     C++  NV +CG +P +
Sbjct: 72  GGCSPQFLTCSGGISRIMDCPADLIYDPRIVACEYSYNVPQCGGVPQD 119



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 26  CSKFYM-CAHGEEVEFNCNGGLIFDFELQTC 115
           CS+ Y  C +G+E  F C  GL F  E   C
Sbjct: 537 CSQHYKNCVNGQEAIFICENGLFFSPEQARC 567


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 11  PHFRDCSKFYMCAHGEEVEFNCNGGLIFDFELQTCN 118
           P   +C  FY CA G   + +C  G I+D    TC+
Sbjct: 167 PDVYNCKNFYQCASGLWTQRSCGEGTIWDQHKLTCD 202


>U41038-2|AAX88827.1|  635|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform b
           protein.
          Length = 635

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 376 TIALVSHLFRCSISPVAVQLVVEEPQITWRQSASLCLLSLLEDIY 242
           ++AL   L  C + P+++  VVE     W  S S+CLL +  D++
Sbjct: 48  SLALADLLVCCIVMPLSI--VVEVRHGVWTWSVSMCLLYVYSDVF 90


>U41038-1|AAK29709.2|  683|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform a
           protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 376 TIALVSHLFRCSISPVAVQLVVEEPQITWRQSASLCLLSLLEDIY 242
           ++AL   L  C + P+++  VVE     W  S S+CLL +  D++
Sbjct: 96  SLALADLLVCCIVMPLSI--VVEVRHGVWTWSVSMCLLYVYSDVF 138


>AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 635

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 376 TIALVSHLFRCSISPVAVQLVVEEPQITWRQSASLCLLSLLEDIY 242
           ++AL   L  C + P+++  VVE     W  S S+CLL +  D++
Sbjct: 48  SLALADLLVCCIVMPLSI--VVEVRHGVWTWSVSMCLLYVYSDVF 90


>AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 376 TIALVSHLFRCSISPVAVQLVVEEPQITWRQSASLCLLSLLEDIY 242
           ++AL   L  C + P+++  VVE     W  S S+CLL +  D++
Sbjct: 96  SLALADLLVCCIVMPLSI--VVEVRHGVWTWSVSMCLLYVYSDVF 138


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 242 IDILKQTQQAQ*GRLSPSNLRFFNHELNCHRADAAAKQVAYKGDCQRY 385
           +D+  +    +   + P N +F   +++C  A  +A Q  Y   C+ Y
Sbjct: 278 VDVCSEADDEKTHAVLPVNSQFCKEDMHCQNAGVSANQTEYSHHCRSY 325


>Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical
           protein M03C11.5 protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 622 RRLISGRGAQMSTPSQIATQSYIKRNEPS 536
           +R+ISG+  +  TP+ +   +  KRN+PS
Sbjct: 634 KRVISGQKIKRPTPAAVKKSNETKRNQPS 662


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 586 TPSQIATQSYIKRNEPSFCTQ*IRLVLLVRYHAALDVGLEVTLLRQLVEEESIRT 422
           TP       YI  N P FC     L L  R +  +  GLE  + + L  ++  +T
Sbjct: 748 TPLDTKLGVYIANNHPEFCLTTSELQLFARTNVQI-YGLEAKICKDLFRKDGQKT 801


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,779
Number of Sequences: 27780
Number of extensions: 351271
Number of successful extensions: 914
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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