Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0946
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    25   0.76 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.76 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   9.4  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.4  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 215 FGEEVENGPIDILKQTQQAQ*GRLSP 292
           FG+E +NG I    + Q+   GRLSP
Sbjct: 94  FGKEYKNGFIKGQSEVQRGPGGRLSP 119


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 504 SSGITPHLTLASKSHCCVSSLKKSPSVQYMA*GTPPTHR 388
           SSGI PH   +S S+      + SPS   M   +PP HR
Sbjct: 28  SSGI-PHSAESSASNSPDHYERFSPSTHLMDLSSPPEHR 65


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 320 LNCHRADAAAKQVAYKGDCQR 382
           L+CH A  A K    K  C R
Sbjct: 361 LDCHTAHIACKFAEIKEKCDR 381


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 320 LNCHRADAAAKQVAYKGDCQR 382
           L+CH A  A K    K  C R
Sbjct: 72  LDCHTAHIACKFAEIKEKCDR 92


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 104 LQTCNWKWATNCTLR 148
           L T N+ W + CT R
Sbjct: 60  LDTGNFSWGSECTTR 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,010
Number of Sequences: 438
Number of extensions: 4307
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)