Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0946
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra...    32   0.36 
At1g09730.1 68414.m01092 Ulp1 protease family protein low simila...    29   3.3  
At5g37210.1 68418.m04468 DC1 domain-containing protein contains ...    28   5.8  
At1g66290.1 68414.m07528 F-box family protein contains F-box dom...    28   7.7  

>At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP
           transferase 2 (IPT2) identical to tRNA
           isopentenyltransferase (IPT2) [Arabidopsis thaliana]
           GI:14279058; identical to cDNA tRNA isopentenyl
           transferase GI:12383201;
          Length = 466

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 215 FGEEVENGPIDILKQTQQAQ*GRLSPSNLRFFNHELNCHRADAAAKQVAYKGDCQRYWRC 394
           FG +  +   ++LK+       R+ P+N R  N  L+ H +        Y+G     W C
Sbjct: 159 FGRDDLSHGYELLKELDPVAANRIHPNNHRKINQYLSLHASRGVLPSKLYQGKTAENWGC 218

Query: 395 V 397
           +
Sbjct: 219 I 219


>At1g09730.1 68414.m01092 Ulp1 protease family protein low
           similarity to SP|Q9GZR1 SUMO-1-specific protease 1 (EC
           3.4.22.-) (Sentrin-specific protease SENP6) (Protease
           FKSG6) {Homo sapiens}; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 984

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = -1

Query: 574 IATQSYIKRNE--PSFCTQ*IRLVLLVRYHAALDVGLEVTLLRQLVEEESIRTVHGLRHA 401
           I  +S++  NE  P  C   +  ++ ++Y+   +VGL +  +R L+++E+        H 
Sbjct: 300 IKIKSFLANNEEVPFSCEFGVEDIVSIQYNWYQNVGLIILRIRVLLKDENCHEGMYTCHL 359

Query: 400 AHAPPVPLTIALVSHLFRCSIS 335
            +   +P+   LVS++    I+
Sbjct: 360 GYHKILPVKSGLVSYMEELKIA 381


>At5g37210.1 68418.m04468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 625

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 389 RCVGGVPQAMYCTDGLFFNELTQQCDFEANVKCGVIPD 502
           RC    P  +  T G F+    ++CDF+ +V+C  + +
Sbjct: 447 RCCSACPWLI--TTGFFYRCEREECDFQLHVQCATVSE 482


>At1g66290.1 68414.m07528 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 65  EFNCNGGLIFDFELQTCNWKW 127
           +  C   L  D +L TC+WKW
Sbjct: 102 KLRCGSDLDGDVDLATCSWKW 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,934,461
Number of Sequences: 28952
Number of extensions: 323562
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)