Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0945
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.0  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   6.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.2  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 184 PSSERPQRTRVETTNSPAGSRLPSVSTS 101
           PS   PQ +    + SPA    P VS +
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAA 67


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 184 PSSERPQRTRVETTNSPAGSRLPSVSTS 101
           PS   PQ +    + SPA    P VS +
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAA 67


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 504 CRSPPICIEMMRRWSSSLH-HTRNVLFSLW*MP 409
           C SPP   E++RR+    +  T ++  S W +P
Sbjct: 372 CESPPAADELLRRFHEIRYMSTIDLRSSYWQIP 404


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 410 GIYHNENKTFLVWCNEEDHLRIISMQMGGD 499
           G  HN    F+ + ++ DH  + S  + GD
Sbjct: 360 GDLHNMGHVFISYIHDPDHRHLESFGVMGD 389


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 45  EDYHNGFKKTDKHPPKNWGDVDTLGN 122
           ED H  F+    H P  W +++T  N
Sbjct: 79  EDVHKVFQHLMIHRPNWWHELETKFN 104


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +2

Query: 203 PHRVP-VQGDGGQGLRHPASLEGELKGTFYP 292
           PH+ P +Q    QG + P +    L    YP
Sbjct: 204 PHQQPPIQQQPNQGQQPPGNTAAALPSPLYP 234


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +2

Query: 203 PHRVP-VQGDGGQGLRHPASLEGELKGTFYP 292
           PH+ P +Q    QG + P +    L    YP
Sbjct: 206 PHQQPPIQQQPNQGQQPPGNTAAALPSPLYP 236


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 186 YPFNPCLTESQYK 224
           +PF+PC   + YK
Sbjct: 61  FPFSPCNNTANYK 73


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 556 PFSHHDRLGFLTFCPTNLGTRSAPPCTSSCRSWRPTRR 669
           P+S + ++G     P++L   SA  C S  +   PT R
Sbjct: 146 PYSPNGKIGREDLSPSSLNGYSADSCDSK-KKKGPTPR 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,340
Number of Sequences: 336
Number of extensions: 2380
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)