Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0945
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    27   3.3  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   5.7  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   5.7  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.5  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.9  

>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 405 PVGQKR-QALAACRKRSPSLNRKWSSMSCCWVSFDMPVRG 289
           P G+KR  A+AA + R+P L   +      + +FD  V+G
Sbjct: 43  PPGEKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKG 82


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  IIEDYHNGFKKTDKHPPKNW 98
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 395 WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQY 511
           WP    ++  + KT L W  E   L  + + +GG   Q+
Sbjct: 195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQW 233


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 GRAQGHVLPPHRHVEGDPAAAHRRPLPVQGG 357
           GR Q  VLP       DPAA   +PLP + G
Sbjct: 513 GRCQSMVLPIMNKWTVDPAAKDVKPLPRKVG 543


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 120 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 242
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 84  PPKNWGDV 107
           PPKNWGDV
Sbjct: 521 PPKNWGDV 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,438
Number of Sequences: 5004
Number of extensions: 38583
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)