Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0945
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665...    32   0.48 
10_05_0052 - 8586577-8588007                                           31   1.1  
10_05_0053 + 8602142-8603581                                           28   5.9  
05_04_0145 - 18391112-18392461,18392545-18392637                       28   5.9  
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012...    28   5.9  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    28   7.8  
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    28   7.8  

>04_03_0256 -
           13564070-13564456,13564543-13565299,13565734-13566535,
           13566884-13566917
          Length = 659

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = -1

Query: 271 LALEAGRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQF 92
           + L+A   P   +   +Y   ++ G+ GY  S  PQ       ++    R+P+  T   F
Sbjct: 190 MILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYNYVVSTNKSKRVPTTVT---F 246

Query: 91  LGGCLSVFLK 62
             GC S+F++
Sbjct: 247 TNGCFSIFVQ 256


>10_05_0052 - 8586577-8588007
          Length = 476

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 559 FSHHDRLGFLTFCPTNLGTRSAPPCTSSCRSWR 657
           F  HD +  L F  ++L       CT++CR WR
Sbjct: 50  FPLHDEVLLLVFAASSLDLHDLVRCTATCRRWR 82


>10_05_0053 + 8602142-8603581
          Length = 479

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 568 HDRLGFLTFCPTNLGTRSAPPCTSSCRSWR 657
           HD +  L F   +L T     C ++CR WR
Sbjct: 61  HDEVLLLVFAECSLETDDLVRCAATCRRWR 90


>05_04_0145 - 18391112-18392461,18392545-18392637
          Length = 480

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/82 (25%), Positives = 28/82 (34%)
 Frame = -1

Query: 259 AGRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLGGC 80
           AG++P  L       D    G    PS   P+R R     +     +     S Q   G 
Sbjct: 24  AGKIPRFLPQQQPGRDGADHGSSNAPSPPTPRRARHAPATTAVTYSVAFAVGSQQDFSGA 83

Query: 79  LSVFLKPLW*SSMIGSNSSANT 14
           L V  + +W       NSS  T
Sbjct: 84  LDVTSEFVWVPCCATGNSSCGT 105


>04_03_0999 -
           21600231-21600788,21600896-21601056,21601149-21601241,
           21601379-21601531,21601917-21601992,21602078-21602197,
           21602348-21602597,21602917-21603008,21603408-21603581
          Length = 558

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 175 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 68
           +RP+ +RV  T     +R+P   +  +++ G LS F
Sbjct: 36  KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 413 IYHNENKTFLVWCNEEDHLRIISMQM-GGDLQQYTRG 520
           ++H    + + +CN++ HL ++   M GG L  + RG
Sbjct: 623 VHHRNLVSLIGYCNDKKHLALVYEYMDGGSLADHLRG 659


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 472 HHLDADGWRP-AAVYKRLVSAVNEIEKKIPFSHHD 573
           HHL + G+RP A  +++    + +  K IP  HH+
Sbjct: 270 HHLGSAGYRPKAKKWRKEEEELKKAGKPIPMEHHN 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,468
Number of Sequences: 37544
Number of extensions: 344391
Number of successful extensions: 1575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)